CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74755	Soybean	nucleus	94.16	93.95
KRH75984	Soybean	cytosol	33.26	69.81
VIT_01s0026g01470.t01	Wine grape	cytosol	63.6	63.74
KRH74859	Soybean	peroxisome	48.99	58.92
AT1G27090.1	Thale cress	nucleus	53.71	56.9
CDY16217	Canola	nucleus	51.24	56.02
CDY46422	Canola	nucleus	50.34	55.45
CDY14707	Canola	nucleus	51.46	54.92
Bra016305.1-P	Field mustard	nucleus	50.11	54.79
CDY52255	Canola	nucleus	50.34	54.5
PGSC0003DMT400019928	Potato	nucleus	51.01	51.95
Solyc01g010440.2.1	Tomato	nucleus	51.01	51.36
GSMUA_Achr4P22310_001	Banana	nucleus	50.34	50.56
HORVU7Hr1G119250.1	Barley	cytosol	12.13	50.47
GSMUA_Achr4P17410_001	Banana	nucleus	40.0	49.72
PGSC0003DMT400045462	Potato	nucleus	45.84	47.66
HORVU7Hr1G119330.1	Barley	cytosol	6.52	43.94
HORVU4Hr1G004550.1	Barley	cytosol	6.29	42.42
HORVU1Hr1G071550.1	Barley	cytosol	6.29	42.42
HORVU3Hr1G093520.1	Barley	cytosol	6.29	41.79
Zm00001d033549_P003	Maize	mitochondrion, plasma membrane	37.53	36.95
TraesCS4B01G030200.1	Wheat	cytosol	9.66	36.13
Os03t0688200-01	Rice	plastid	37.53	35.84
TraesCS4B01G029200.1	Wheat	plastid	36.4	35.45
Zm00001d013528_P001	Maize	plasma membrane	35.73	34.79
TraesCS4D01G027100.2	Wheat	plastid	36.18	34.7
HORVU4Hr1G004410.3	Barley	plastid	34.83	34.68
Solyc05g006900.1.1	Tomato	cytosol, endoplasmic reticulum, golgi	25.39	34.35
EER93647	Sorghum	plastid	35.73	34.19
TraesCS4A01G283500.3	Wheat	plastid	35.73	33.97
TraesCS6A01G179400.1	Wheat	cytosol, nucleus, plasma membrane	31.91	19.29
TraesCS4A01G258800.2	Wheat	cytosol	30.56	16.79
TraesCS4B01G032400.1	Wheat	cytosol	26.07	16.71
TraesCS4D01G030100.1	Wheat	cytosol	26.52	16.14
TraesCS7A01G186400.1	Wheat	cytosol	25.17	16.09
TraesCS4A01G280000.1	Wheat	cytosol	20.67	14.91
TraesCS3B01G283500.1	Wheat	cytosol	6.97	12.7
TraesCS7A01G186200.1	Wheat	cytosol	10.11	11.54
TraesCS4A01G280100.1	Wheat	cytosol	9.89	11.14
TraesCS4D01G027500.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	8.54	7.31

Protein Annotations

EMBL:ACUP02000704	EnsemblPlants:KRH69381	EnsemblPlantsGene:GLYMA_02G022800	EntrezGene:100816406	PANTHER:PTHR37736	ProteinID:KRH69381
ProteinID:KRH69381.1	SEG:seg	UniParc:UPI0002337458	UniProt:I1JBS3	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr2:+:2084079..2090865

Molecular Weight (calculated)

48619.0 Da

IEP (calculated)

4.937

GRAVY (calculated)

-0.784

Length

445 amino acids

Sequence
(BLAST)

001: MAATASNNDV AAANDGPVMS LINKRLRALR KKLNRILAME EAVTLGKPLN KEQEEVLRSK PSVLALIDEL DKLRQPLATA LSEELQINGT SSQNPRHETE
101: TENETLAESS GSTEPNSNSR NDVVVEDLLN LLYFGSLFDV KSDFASTMLT RTHERGCCLT YDYVTDDATD LLGEKDLDSI SALRGLLVSR PADSSFSHKN
201: ALHRCVEHAK LWLAKSEQPI GPDADVTYAA LREKLNKIMS SEYFTTTPEM KAPVEVAAAA AGGNYVSFHV PVHGSVVPVE VEQPVFQSQE KDEGTAIQGH
301: GSEEDPSDPE GELLKDEVEA EAENAGEVVS VQHEQTNQQV DLEYNERDVE AKDQQSYPRR GYQNHRGGRG GGGRRGYSNG RGGRSGGRGG YQNGRNQYYD
401: QPGNYYPRNN YYNNRGRGGR GGGYYNNHGA GGQVNHVAGD VGVQS

Best Arabidopsis Sequence Match ( AT1G27090.1 )
(BLAST)

001: MAATASSEAS EGPVMGLINK RLRALRKKYN RITQMEESIS QGKTLNKEQE EVLRSKPAVV ILIDELEKIR APLSAAVTEE ISLATQLNRA SSDQTTASEQ
101: KEVTDIPQEV SGGDDGAKLE DLVNFLYFGS LFDVKSQNEF TSIMLTRTHE RSCCLSYDYV TDDATDLLGD RDLDSISQLW SLMVSRPVDS SLSHKNALER
201: CVEHAKLWLA NSEQPIESNC NTSYAALREK LKKIMASDYF TTTPEMKAPV DVAAAAGNYT SYQVPVDVEA SGHYQQKEED ASNSKEVESV VNDQSQQDEH
301: QKVELVTEGE VVHGQQEQGY TQVGGAENAK RDYVPRGSYQ NQRGRRGARR GGGGYQNGRG GRGGGGGYQN GRYESYDQSG GNGYQRNYYN NRGRGRGGGG
401: GGGNGHSYNN YQDPNVAVAS

Arabidopsis Description

Glycine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q9LFX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.