Factsheet for TraesCS4D01G027500.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane

Predictor Summary:

plasma membrane 1
mitochondrion 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, endoplasmic reticulum, plasma membrane
MultiLoc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G004550.1	Barley	cytosol	7.31	57.58
TraesCS4D01G030100.1	Wheat	cytosol	60.58	43.09
AT3G24690.1	Thale cress	mitochondrion	7.5	24.68
CDX94550	Canola	nucleus	6.92	21.82
Bra029489.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	6.73	21.74
CDY16672	Canola	cytosol, mitochondrion, nucleus, plastid	6.73	21.74
CDX90857	Canola	nucleus	5.0	20.16
CDY21298	Canola	nucleus	5.0	19.55
Solyc05g006900.1.1	Tomato	cytosol, endoplasmic reticulum, golgi	10.58	16.72
Bra000790.1-P	Field mustard	nucleus	4.04	16.41
TraesCS4D01G027100.2	Wheat	plastid	11.54	12.93
Zm00001d033549_P003	Maize	mitochondrion, plasma membrane	10.38	11.95
Zm00001d013528_P001	Maize	plasma membrane	10.38	11.82
EER93647	Sorghum	plastid	10.19	11.4
Os03t0688200-01	Rice	plastid	10.0	11.16
TraesCS3B01G283500.1	Wheat	cytosol	5.19	11.07
PGSC0003DMT400045462	Potato	nucleus	8.08	9.81
Solyc01g010440.2.1	Tomato	nucleus	7.88	9.28
PGSC0003DMT400019928	Potato	nucleus	7.69	9.15
GSMUA_Achr4P22310_001	Banana	nucleus	7.69	9.03
VIT_01s0026g01470.t01	Wine grape	cytosol	7.5	8.78
KRH74755	Soybean	nucleus	7.5	8.74
KRH69381	Soybean	nucleus	7.31	8.54
KRH74859	Soybean	peroxisome	5.58	7.84
GSMUA_Achr4P17410_001	Banana	nucleus	5.0	7.26
TraesCS4A01G280100.1	Wheat	cytosol	5.38	7.09
TraesCS7A01G186200.1	Wheat	cytosol	3.65	4.87
KRH75984	Soybean	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS4D01G027500.1	EnsemblPlantsGene:TraesCS4D01G027500	InterPro:DUF1618	PANTHER:PTHR33074	PFAM:PF07762	SEG:seg
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:12368746..12370405

Molecular Weight (calculated)

58044.4 Da

IEP (calculated)

6.590

GRAVY (calculated)

-0.170

Length

520 amino acids

Sequence
(BLAST)

001: MPADQPSLGD GRHPHILLDK KCLIGYLENS TTAKTRNSQG LDVEVSFKTA DPPAISLCFA RCVDHQTGKS LVAEPFILGI AGRFVLLAIT FLDSANHYRR
101: FLDYFVYKAA GPGSASLHLL PRPYPSSFSR NLVAVLPVTD NNSEEDFAVV FPHVGYIVPE SRRHYALHIY RSDMNAWHSQ TAYVAKEDGE TRNAKHKLSV
201: HNAMSVAYVE KGVVGWIDLW WGILLCNVLD SKPIIRFIPL PIPEPCDPSE FHLTFEDFTP RPHRHVTICH GLIKFVGLNF HADNAIRNMK RAQDHGWTAT
301: TWTRSIYSDD VWHDGMTIDT SEIYFTDSSL PSLLPGMFDE ENNLTWGKFT TAGPTLSLLD DDIMYIMAKE SMCHQTAYVL AVNTKSLKLE SGAQCSAQKM
401: RWFEPTYEPC LLLSSFGTTS ELVKEFETKA TIMETKEGPI LSVLSRRLHA LRKQQNRIAR TEESIAAGMT LSQEQKEAMR SKPVLAAVID ELERLRAPLA
501: AALAEELSTI SAPAAGSSSI

Best Arabidopsis Sequence Match ( AT1G27090.1 )
(BLAST)

001: MAATASSEAS EGPVMGLINK RLRALRKKYN RITQMEESIS QGKTLNKEQE EVLRSKPAVV ILIDELEKIR APLSAAVTEE ISLATQLNRA SSDQTTASEQ
101: KEVTDIPQEV SGGDDGAKLE DLVNFLYFGS LFDVKSQNEF TSIMLTRTHE RSCCLSYDYV TDDATDLLGD RDLDSISQLW SLMVSRPVDS SLSHKNALER
201: CVEHAKLWLA NSEQPIESNC NTSYAALREK LKKIMASDYF TTTPEMKAPV DVAAAAGNYT SYQVPVDVEA SGHYQQKEED ASNSKEVESV VNDQSQQDEH
301: QKVELVTEGE VVHGQQEQGY TQVGGAENAK RDYVPRGSYQ NQRGRRGARR GGGGYQNGRG GRGGGGGYQN GRYESYDQSG GNGYQRNYYN NRGRGRGGGG
401: GGGNGHSYNN YQDPNVAVAS

Arabidopsis Description

Glycine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q9LFX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.