CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000790.1-P	Field mustard	nucleus	84.5	85.16
CDY21298	Canola	nucleus	83.72	81.2
CDX94550	Canola	nucleus	62.02	48.48
CDY16672	Canola	cytosol, mitochondrion, nucleus, plastid	59.69	47.83
AT3G24690.1	Thale cress	mitochondrion	55.04	44.94
TraesCS4B01G030200.1	Wheat	cytosol	21.71	23.53
HORVU1Hr1G071550.1	Barley	cytosol	10.08	19.7
HORVU7Hr1G119330.1	Barley	cytosol	9.3	18.18
HORVU4Hr1G004550.1	Barley	cytosol	9.3	18.18
HORVU3Hr1G093520.1	Barley	cytosol	9.3	17.91
CDY46422	Canola	nucleus	42.64	13.61
CDY16217	Canola	nucleus	41.86	13.27
CDY14707	Canola	nucleus	41.86	12.95
CDY52255	Canola	nucleus	40.31	12.65
GSMUA_Achr4P22310_001	Banana	nucleus	36.43	10.61
GSMUA_Achr4P17410_001	Banana	nucleus	28.68	10.34
HORVU7Hr1G119250.1	Barley	cytosol	8.53	10.28
Zm00001d033549_P003	Maize	mitochondrion, plasma membrane	34.11	9.73
EER93647	Sorghum	plastid	34.88	9.68
Zm00001d013528_P001	Maize	plasma membrane	33.33	9.41
Os03t0688200-01	Rice	plastid	33.33	9.23
TraesCS4B01G029200.1	Wheat	plastid	28.68	8.1
TraesCS4D01G027100.2	Wheat	plastid	28.68	7.97
TraesCS4A01G283500.3	Wheat	plastid	28.68	7.91
HORVU4Hr1G004410.3	Barley	plastid	27.13	7.83
TraesCS4A01G280000.1	Wheat	cytosol	26.36	5.51
TraesCS4B01G032400.1	Wheat	cytosol	29.46	5.48
TraesCS7A01G186400.1	Wheat	cytosol	29.46	5.46
TraesCS6A01G179400.1	Wheat	cytosol, nucleus, plasma membrane	28.68	5.03
TraesCS4D01G027500.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	20.16	5.0
TraesCS4D01G030100.1	Wheat	cytosol	27.13	4.79
TraesCS4A01G258800.2	Wheat	cytosol	27.91	4.44
TraesCS3B01G283500.1	Wheat	cytosol	7.75	4.1
TraesCS7A01G186200.1	Wheat	cytosol	8.53	2.82
TraesCS4A01G280100.1	Wheat	cytosol	8.53	2.78

Protein Annotations

EnsemblPlants:CDX90857	EnsemblPlantsGene:GSBRNA2T00151572001	PANTHER:PTHR37736	ProteinID:CDX90857	ProteinID:CDX90857.1	SEG:seg
UniParc:UPI0004EE4315	MapMan:35.2	:	:	:	:

Description

BnaA03g25370D

Coordinates

chrLK031864:-:887202..887747

Molecular Weight (calculated)

14432.1 Da

IEP (calculated)

10.029

GRAVY (calculated)

-1.115

Length

129 amino acids

Sequence
(BLAST)

001: MAATEGQHVM ALISKRLRTH RKKYNRITEM EESISQELEK LRLPPPSAAV SEEIISLPAK KNKKQKVASE EKDVTSRTDM EDCKFSDEVS KDDISPCSES
101: SQDVTPSPPS TSSGKARRKK KSKKPQTTN

Best Arabidopsis Sequence Match ( AT3G24690.1 )
(BLAST)

001: MAAVEGQISA LISKRLRTLR KKYNRITDME ESISQGKTLN KEQEDTLRSK PIVSALIDEL VKLRIPPPSA AISEETSPPA KNKKQQKLSH ARKEVAEEEN
101: VTAKTDIEDC KISDDGINSE VSKDDTSPSS ESSQGVTPSP LSRKARRKRN AKKPQIPQ

Arabidopsis Description

BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT1G27090.1); Has 51 Blast hits to 50 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). [Source:TAIR;Acc:AT3G24690]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.