CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16672	Canola	cytosol, mitochondrion, nucleus, plastid	87.88	90.06
CDY21298	Canola	nucleus	51.52	63.91
CDX90857	Canola	nucleus	48.48	62.02
AT3G24690.1	Thale cress	mitochondrion	48.48	50.63
HORVU1Hr1G071550.1	Barley	cytosol	16.36	40.91
HORVU7Hr1G119330.1	Barley	cytosol	16.36	40.91
HORVU3Hr1G093520.1	Barley	cytosol	15.76	38.81
HORVU4Hr1G004550.1	Barley	cytosol	14.55	36.36
TraesCS4B01G030200.1	Wheat	cytosol	23.64	32.77
CDY46422	Canola	nucleus	36.36	14.85
CDY16217	Canola	nucleus	35.76	14.5
CDY52255	Canola	nucleus	35.76	14.36
CDY14707	Canola	nucleus	35.76	14.15
GSMUA_Achr4P22310_001	Banana	nucleus	33.33	12.42
Zm00001d033549_P003	Maize	mitochondrion, plasma membrane	33.94	12.39
EER93647	Sorghum	plastid	34.55	12.26
Zm00001d013528_P001	Maize	plasma membrane	33.33	12.04
HORVU7Hr1G119250.1	Barley	cytosol	7.27	11.21
GSMUA_Achr4P17410_001	Banana	nucleus	24.24	11.17
Os03t0688200-01	Rice	plastid	29.7	10.52
HORVU4Hr1G004410.3	Barley	plastid	28.48	10.51
TraesCS4B01G029200.1	Wheat	plastid	28.48	10.28
TraesCS4D01G027100.2	Wheat	plastid	28.48	10.13
TraesCS4A01G283500.3	Wheat	plastid	28.48	10.04
TraesCS4D01G027500.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	21.82	6.92
TraesCS4A01G280000.1	Wheat	cytosol	25.45	6.81
TraesCS4B01G032400.1	Wheat	cytosol	27.27	6.48
TraesCS7A01G186400.1	Wheat	cytosol	27.27	6.47
TraesCS4D01G030100.1	Wheat	cytosol	26.67	6.02
TraesCS6A01G179400.1	Wheat	cytosol, nucleus, plasma membrane	26.67	5.98
TraesCS3B01G283500.1	Wheat	cytosol	8.48	5.74
TraesCS4A01G258800.2	Wheat	cytosol	27.88	5.68
TraesCS7A01G186200.1	Wheat	cytosol	9.09	3.85
TraesCS4A01G280100.1	Wheat	cytosol	8.48	3.54

Protein Annotations

EnsemblPlants:CDX94550	EnsemblPlantsGene:GSBRNA2T00157801001	ncoils:Coil	PANTHER:PTHR37736	ProteinID:CDX94550	ProteinID:CDX94550.1
SEG:seg	UniParc:UPI0004EBBDCD	MapMan:35.2	:	:	:

Description

BnaC09g22860D

Coordinates

chrLK031882:-:968371..969228

Molecular Weight (calculated)

18227.6 Da

IEP (calculated)

9.941

GRAVY (calculated)

-1.147

Length

165 amino acids

Sequence
(BLAST)

001: MAVTEGQQVM ALISKRLRAH RKRYNRITEM EEAVSQGKTL NKEQEEAIRS KPIVTALIEE LEKLRLPPSP PPSAAGSEEI NLPAKKNKKK KERKEEAEEE
101: KVTEKDVTDP EGCKISDGLD AGEVSKDNIS PCSVSSQDGT TSPPPATNGK PRRKRNKAKK PQTSN

Best Arabidopsis Sequence Match ( AT3G24690.1 )
(BLAST)

001: MAAVEGQISA LISKRLRTLR KKYNRITDME ESISQGKTLN KEQEDTLRSK PIVSALIDEL VKLRIPPPSA AISEETSPPA KNKKQQKLSH ARKEVAEEEN
101: VTAKTDIEDC KISDDGINSE VSKDDTSPSS ESSQGVTPSP LSRKARRKRN AKKPQIPQ

Arabidopsis Description

BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT1G27090.1); Has 51 Blast hits to 50 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). [Source:TAIR;Acc:AT3G24690]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.