Factsheet for TraesCS6A01G179400.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G186400.1	Wheat	cytosol	73.78	78.02
TraesCS4B01G032400.1	Wheat	cytosol	72.01	76.37
TraesCS4A01G258800.2	Wheat	cytosol	74.59	67.78
TraesCS4A01G280000.1	Wheat	cytosol	56.25	67.1
TraesCS4A01G283500.3	Wheat	plastid	37.91	59.62
EER93647	Sorghum	plastid	30.43	48.17
Zm00001d033549_P003	Maize	mitochondrion, plasma membrane	29.21	47.57
Zm00001d013528_P001	Maize	plasma membrane	29.48	47.48
Os03t0688200-01	Rice	plastid	28.67	45.28
GSMUA_Achr4P17410_001	Banana	nucleus	15.9	32.68
KRH74755	Soybean	nucleus	19.7	32.51
VIT_01s0026g01470.t01	Wine grape	cytosol	19.57	32.43
AT3G24690.1	Thale cress	mitochondrion	6.93	32.28
KRH69381	Soybean	nucleus	19.29	31.91
GSMUA_Achr4P22310_001	Banana	nucleus	19.16	31.83
Solyc05g006900.1.1	Tomato	cytosol, endoplasmic reticulum, golgi	13.86	31.0
Solyc01g010440.2.1	Tomato	nucleus	18.48	30.77
PGSC0003DMT400019928	Potato	nucleus	18.21	30.66
PGSC0003DMT400045462	Potato	nucleus	17.39	29.91
CDY21298	Canola	nucleus	5.3	29.32
CDX90857	Canola	nucleus	5.03	28.68
CDY16672	Canola	cytosol, mitochondrion, nucleus, plastid	6.11	27.95
Bra029489.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	6.11	27.95
KRH74859	Soybean	peroxisome	13.72	27.3
CDX94550	Canola	nucleus	5.98	26.67
KRH75984	Soybean	cytosol	7.47	25.94
Bra000790.1-P	Field mustard	nucleus	4.21	24.22
TraesCS4A01G280100.1	Wheat	cytosol	4.35	8.1
TraesCS7A01G186200.1	Wheat	cytosol	4.08	7.69

Protein Annotations

EnsemblPlants:TraesCS6A01G179400.1

EnsemblPlantsGene:TraesCS6A01G179400

InterPro:DUF1618

PFAM:PF07762

SEG:seg

MapMan:35.2

Description

No Description!

Coordinates

chr6A:+:201638826..201645026

Molecular Weight (calculated)

81559.6 Da

IEP (calculated)

6.169

GRAVY (calculated)

-0.524

Length

736 amino acids

Sequence
(BLAST)

001: MAAILPVSDN SEDFAVIFPH VEYFRLESRK HYTLHIYRSD TNDWHSQVAC IAEDNETRNA RGKLLLHNAM SVAYAEKGII GWIDLWWGIL LCNVLDKKPT
101: IRFVSLPVPE PCDTSEFHLM FENLTPRPHR HVTMFNDLIK CVELDFHVQS AFCNMKRAKD YGWMAKTWTR STYSDVWCDG LTIDTSEISF TDSSLPNLLP
201: LMFDEENNLT WKKLTSAGPT LSLFDDNVIY IMAKESMCHP TAYVLTVDTK SLKLESGAQC APQMTAWFEP TYEPCVLFSS FGTTSELVKE FETKGTIFEI
301: KEGPVLSVLS KRLRVLRKKQ NRIAQMEESV AAGKMLNQEQ KELMHSKPVI AALIDELERL RIPLSTALTK ELSTVPAPAA GSSSFGSDLS IQDLLALIYF
401: GSLFYVKSPN EFIATMVARK HERSSCITHG YVWDDTVDLL VENDLDAVSA VAALAAACPS SADRVSHHDA LQACAHHARL WLTRADAPIH PGSVTYAAVR
501: SKLDRIMASD YYTAPAVARN HGAEGLQAQM SMTDSPEAPS LKEILAAENH KEDEEDSSHA TEIDNDHQSN AADLQNVDGK TLVNPHVEYR VAEAEQEKFD
601: VKEQDQMYAE PKKRQFQHPR QSYQNQRGGD RGRRGAYPNG RSGHGGGRGM GSVYENGHGG GGGGYQGGGG EYQNGRGGGG EYQNGRGGGG SGGYQNSRGG
701: GGGSGYYNNN DGYYQPRNFN NRGRGAGRWP RGHQED

Best Arabidopsis Sequence Match ( AT3G24690.1 )
(BLAST)

001: MAAVEGQISA LISKRLRTLR KKYNRITDME ESISQGKTLN KEQEDTLRSK PIVSALIDEL VKLRIPPPSA AISEETSPPA KNKKQQKLSH ARKEVAEEEN
101: VTAKTDIEDC KISDDGINSE VSKDDTSPSS ESSQGVTPSP LSRKARRKRN AKKPQIPQ

Arabidopsis Description

BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT1G27090.1); Has 51 Blast hits to 50 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). [Source:TAIR;Acc:AT3G24690]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.