Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 7
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER93647 | Sorghum | plastid | 85.56 | 84.09 |
| Zm00001d033549_P003 | Maize | mitochondrion, plasma membrane | 72.87 | 73.67 |
| HORVU7Hr1G119250.1 | Barley | cytosol | 16.41 | 70.09 |
| HORVU3Hr1G093520.1 | Barley | cytosol | 9.41 | 64.18 |
| HORVU4Hr1G004410.3 | Barley | plastid | 56.46 | 57.72 |
| TraesCS4B01G029200.1 | Wheat | plastid | 57.33 | 57.33 |
| TraesCS4D01G027100.2 | Wheat | plastid | 57.77 | 56.9 |
| Os03t0688200-01 | Rice | plastid | 57.99 | 56.87 |
| TraesCS4A01G283500.3 | Wheat | plastid | 57.33 | 55.98 |
| HORVU7Hr1G119330.1 | Barley | cytosol | 7.44 | 51.52 |
| TraesCS4B01G030200.1 | Wheat | cytosol | 12.91 | 49.58 |
| HORVU4Hr1G004550.1 | Barley | cytosol | 7.0 | 48.48 |
| HORVU1Hr1G071550.1 | Barley | cytosol | 6.78 | 46.97 |
| GSMUA_Achr4P17410_001 | Banana | nucleus | 29.54 | 37.71 |
| GSMUA_Achr4P22310_001 | Banana | nucleus | 36.32 | 37.47 |
| VIT_01s0026g01470.t01 | Wine grape | cytosol | 35.45 | 36.49 |
| KRH74755 | Soybean | nucleus | 35.23 | 36.1 |
| KRH69381 | Soybean | nucleus | 34.79 | 35.73 |
| PGSC0003DMT400019928 | Potato | nucleus | 33.7 | 35.24 |
| AT3G24690.1 | Thale cress | mitochondrion | 12.04 | 34.81 |
| Solyc01g010440.2.1 | Tomato | nucleus | 33.26 | 34.39 |
| CDX94550 | Canola | nucleus | 12.04 | 33.33 |
| CDX90857 | Canola | nucleus | 9.41 | 33.33 |
| CDY21298 | Canola | nucleus | 9.41 | 32.33 |
| PGSC0003DMT400045462 | Potato | nucleus | 29.98 | 32.01 |
| Bra029489.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 11.16 | 31.68 |
| CDY16672 | Canola | cytosol, mitochondrion, nucleus, plastid | 11.16 | 31.68 |
| Solyc05g006900.1.1 | Tomato | cytosol, endoplasmic reticulum, golgi | 22.76 | 31.61 |
| KRH74859 | Soybean | peroxisome | 24.95 | 30.81 |
| TraesCS6A01G179400.1 | Wheat | cytosol, nucleus, plasma membrane | 47.48 | 29.48 |
| Bra000790.1-P | Field mustard | nucleus | 7.88 | 28.12 |
| KRH75984 | Soybean | cytosol | 12.91 | 27.83 |
| TraesCS4A01G258800.2 | Wheat | cytosol | 43.76 | 24.69 |
| TraesCS7A01G186400.1 | Wheat | cytosol | 36.54 | 23.99 |
| TraesCS4B01G032400.1 | Wheat | cytosol | 35.45 | 23.34 |
| TraesCS4D01G030100.1 | Wheat | cytosol | 36.1 | 22.57 |
| TraesCS4A01G280000.1 | Wheat | cytosol | 26.7 | 19.77 |
| TraesCS4D01G027500.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 11.82 | 10.38 |
| TraesCS3B01G283500.1 | Wheat | cytosol | 5.47 | 10.25 |
| TraesCS7A01G186200.1 | Wheat | cytosol | 7.22 | 8.46 |
| TraesCS4A01G280100.1 | Wheat | cytosol | 7.22 | 8.35 |
Protein Annotations
| EMBL:BT063799 | EnsemblPlants:Zm00001d013528_P001 | EnsemblPlants:Zm00001d013528_T001 | EnsemblPlantsGene:Zm00001d013528 | EntrezGene:100382297 | ncoils:Coil |
| PANTHER:PTHR37736 | ProteinID:AQK63779.1 | SEG:seg | UniParc:UPI000194905D | UniProt:C0P680 | MapMan:35.2 |
Description
No Description!
Coordinates
chr5:-:13637285..13641447
Molecular Weight (calculated)
48815.8 Da
IEP (calculated)
4.705
GRAVY (calculated)
-0.653
Length
457 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTSPAASSS APTAFAASAV TMAAEAADGP VLSVVSKRLR ALRKKYNRIT QMEESLAAGK SLNREQEEVL RSKPVVAALI DELERLRPPL ASALAEELSS
101: RSAPAPAATA SSSDSDSSVQ DLLALVYFGS LFDVKQQSDF VSLVYTRELE RSSCLTYDYV GDDPEDSLVE TDLNAVSALA TLAASRPPAA AGVSHRDALQ
201: ACAHHARLWL SRADEPIHPD STITYAGVRA KLDRIMASGY YTAQLEMRTP MDLAAAVANF GAGGVQVQES MVVSPQALEA VEESQDVEEH KDEKEDSEAT
301: EIYSEHQAPV VDAEHVDDEG LVNPADEVPS AEAEQETLDD YVDDQEQKDQ QFTQRRSYQN QRSGGGRGGG RRGYPNGRGV RGYQNGRGGG YQNGRGGGGY
401: QNGRGGGGGY YESGYYQPRN YNNRGRGGRN SYYNNHGGGA QAGGHGHPGR VELGANA
101: RSAPAPAATA SSSDSDSSVQ DLLALVYFGS LFDVKQQSDF VSLVYTRELE RSSCLTYDYV GDDPEDSLVE TDLNAVSALA TLAASRPPAA AGVSHRDALQ
201: ACAHHARLWL SRADEPIHPD STITYAGVRA KLDRIMASGY YTAQLEMRTP MDLAAAVANF GAGGVQVQES MVVSPQALEA VEESQDVEEH KDEKEDSEAT
301: EIYSEHQAPV VDAEHVDDEG LVNPADEVPS AEAEQETLDD YVDDQEQKDQ QFTQRRSYQN QRSGGGRGGG RRGYPNGRGV RGYQNGRGGG YQNGRGGGGY
401: QNGRGGGGGY YESGYYQPRN YNNRGRGGRN SYYNNHGGGA QAGGHGHPGR VELGANA
001: MAATASSEAS EGPVMGLINK RLRALRKKYN RITQMEESIS QGKTLNKEQE EVLRSKPAVV ILIDELEKIR APLSAAVTEE ISLATQLNRA SSDQTTASEQ
101: KEVTDIPQEV SGGDDGAKLE DLVNFLYFGS LFDVKSQNEF TSIMLTRTHE RSCCLSYDYV TDDATDLLGD RDLDSISQLW SLMVSRPVDS SLSHKNALER
201: CVEHAKLWLA NSEQPIESNC NTSYAALREK LKKIMASDYF TTTPEMKAPV DVAAAAGNYT SYQVPVDVEA SGHYQQKEED ASNSKEVESV VNDQSQQDEH
301: QKVELVTEGE VVHGQQEQGY TQVGGAENAK RDYVPRGSYQ NQRGRRGARR GGGGYQNGRG GRGGGGGYQN GRYESYDQSG GNGYQRNYYN NRGRGRGGGG
401: GGGNGHSYNN YQDPNVAVAS
101: KEVTDIPQEV SGGDDGAKLE DLVNFLYFGS LFDVKSQNEF TSIMLTRTHE RSCCLSYDYV TDDATDLLGD RDLDSISQLW SLMVSRPVDS SLSHKNALER
201: CVEHAKLWLA NSEQPIESNC NTSYAALREK LKKIMASDYF TTTPEMKAPV DVAAAAGNYT SYQVPVDVEA SGHYQQKEED ASNSKEVESV VNDQSQQDEH
301: QKVELVTEGE VVHGQQEQGY TQVGGAENAK RDYVPRGSYQ NQRGRRGARR GGGGYQNGRG GRGGGGGYQN GRYESYDQSG GNGYQRNYYN NRGRGRGGGG
401: GGGNGHSYNN YQDPNVAVAS
Arabidopsis Description
Glycine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q9LFX8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.