Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90857 | Canola | nucleus | 85.16 | 84.5 |
| Bra029489.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 52.34 | 41.61 |
| AT3G24690.1 | Thale cress | mitochondrion | 50.0 | 40.51 |
| TraesCS4B01G030200.1 | Wheat | cytosol | 16.41 | 17.65 |
| HORVU4Hr1G004550.1 | Barley | cytosol | 6.25 | 12.12 |
| HORVU3Hr1G093520.1 | Barley | cytosol | 6.25 | 11.94 |
| Bra016305.1-P | Field mustard | nucleus | 37.5 | 11.79 |
| HORVU7Hr1G119250.1 | Barley | cytosol | 9.38 | 11.21 |
| HORVU1Hr1G071550.1 | Barley | cytosol | 5.47 | 10.61 |
| GSMUA_Achr4P17410_001 | Banana | nucleus | 26.56 | 9.5 |
| HORVU7Hr1G119330.1 | Barley | cytosol | 4.69 | 9.09 |
| GSMUA_Achr4P22310_001 | Banana | nucleus | 30.47 | 8.8 |
| EER93647 | Sorghum | plastid | 30.47 | 8.39 |
| Zm00001d033549_P003 | Maize | mitochondrion, plasma membrane | 28.91 | 8.19 |
| Zm00001d013528_P001 | Maize | plasma membrane | 28.12 | 7.88 |
| Os03t0688200-01 | Rice | plastid | 28.12 | 7.73 |
| TraesCS4D01G027100.2 | Wheat | plastid | 25.0 | 6.9 |
| TraesCS4A01G283500.3 | Wheat | plastid | 25.0 | 6.84 |
| TraesCS4B01G029200.1 | Wheat | plastid | 24.22 | 6.78 |
| HORVU4Hr1G004410.3 | Barley | plastid | 23.44 | 6.71 |
| TraesCS4B01G032400.1 | Wheat | cytosol | 25.0 | 4.61 |
| TraesCS7A01G186400.1 | Wheat | cytosol | 25.0 | 4.6 |
| TraesCS4A01G280000.1 | Wheat | cytosol | 21.88 | 4.54 |
| TraesCS6A01G179400.1 | Wheat | cytosol, nucleus, plasma membrane | 24.22 | 4.21 |
| TraesCS4D01G027500.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 16.41 | 4.04 |
| TraesCS4D01G030100.1 | Wheat | cytosol | 22.66 | 3.97 |
| TraesCS4A01G258800.2 | Wheat | cytosol | 23.44 | 3.7 |
| TraesCS3B01G283500.1 | Wheat | cytosol | 7.03 | 3.69 |
| TraesCS7A01G186200.1 | Wheat | cytosol | 7.03 | 2.31 |
| TraesCS4A01G280100.1 | Wheat | cytosol | 7.03 | 2.28 |
Protein Annotations
Description
AT3G24690 (E=1e-016) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT1G27090.1); Has 28 Blast hits to 27 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Coordinates
chrA03:-:13136389..13136934
Molecular Weight (calculated)
14080.7 Da
IEP (calculated)
9.583
GRAVY (calculated)
-1.053
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATEGQHVM ALISKRLRTH RKKYNRITEV EESISQAPHP PSAAVSEEII SLPAKKNKMQ KACKEVAPEE KDLTSKTDME DCKVSDEVSK DDISPCSESS
101: KDVTPSPPST SSGKAQRKKK SKKPQTTN
101: KDVTPSPPST SSGKAQRKKK SKKPQTTN
001: MAAVEGQISA LISKRLRTLR KKYNRITDME ESISQGKTLN KEQEDTLRSK PIVSALIDEL VKLRIPPPSA AISEETSPPA KNKKQQKLSH ARKEVAEEEN
101: VTAKTDIEDC KISDDGINSE VSKDDTSPSS ESSQGVTPSP LSRKARRKRN AKKPQIPQ
101: VTAKTDIEDC KISDDGINSE VSKDDTSPSS ESSQGVTPSP LSRKARRKRN AKKPQIPQ
Arabidopsis Description
BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT1G27090.1); Has 51 Blast hits to 50 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). [Source:TAIR;Acc:AT3G24690]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.