Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46422 | Canola | nucleus | 98.77 | 99.5 |
| AT1G27090.1 | Thale cress | nucleus | 72.73 | 70.48 |
| VIT_01s0026g01470.t01 | Wine grape | cytosol | 55.77 | 51.13 |
| KRH69381 | Soybean | nucleus | 54.79 | 50.11 |
| KRH74755 | Soybean | nucleus | 54.3 | 49.55 |
| PGSC0003DMT400019928 | Potato | nucleus | 47.42 | 44.16 |
| Solyc01g010440.2.1 | Tomato | nucleus | 47.91 | 44.12 |
| KRH75984 | Soybean | cytosol | 22.36 | 42.92 |
| PGSC0003DMT400045462 | Potato | nucleus | 42.26 | 40.19 |
| Bra000790.1-P | Field mustard | nucleus | 11.79 | 37.5 |
| KRH74859 | Soybean | peroxisome | 31.94 | 35.14 |
| Bra029489.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 13.76 | 34.78 |
| Solyc05g006900.1.1 | Tomato | cytosol, endoplasmic reticulum, golgi | 25.8 | 31.91 |
Protein Annotations
| EnsemblPlants:Bra016305.1 | EnsemblPlants:Bra016305.1-P | EnsemblPlantsGene:Bra016305 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | ncoils:Coil | PANTHER:PTHR37736 | SEG:seg | UniParc:UPI00025461F5 | UniProt:M4DIH8 |
| MapMan:35.2 | : | : | : | : | : |
Description
AT1G27090 (E=3e-107) | glycine-rich protein
Coordinates
chrA08:-:17811094..17812953
Molecular Weight (calculated)
44559.5 Da
IEP (calculated)
5.351
GRAVY (calculated)
-0.788
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTTATSDA GEGPVMALIN KRLRALRKKL NRITQMEESI SQGKTLNTEQ QEVLRSKPSV VVLIEELDKL RAPLSAAVSE EIALATHHTS SDQTTAVAPE
101: EEKEVQKLED LVNLLYFGSL FEVKSQSELA SIMMTRTHER GCCLVYDTVT DESTDLLCDK DLDLISRLWG MMVSRPADSS LSHKNALERC VEHAKLWLAN
201: SDQPIESNCD VSYAVLREKV KKIMGSNYFT ITPEMVVAPV EAAAEAGSYG SFQVAADSEQ KEEDASNFKE QESYVNDQSE QPKDESVVTE GEVVQGQQEQ
301: GYTQVEGGRS KRDYQQQQYV PRGSHQNQRG HRGARRGYSN APRGGRGGGG GYSNGRYESY DNSGGNGYQR SHYNNRGRGR GGGGGGGGGN GHSYNNNHQD
401: SNVSVAS
101: EEKEVQKLED LVNLLYFGSL FEVKSQSELA SIMMTRTHER GCCLVYDTVT DESTDLLCDK DLDLISRLWG MMVSRPADSS LSHKNALERC VEHAKLWLAN
201: SDQPIESNCD VSYAVLREKV KKIMGSNYFT ITPEMVVAPV EAAAEAGSYG SFQVAADSEQ KEEDASNFKE QESYVNDQSE QPKDESVVTE GEVVQGQQEQ
301: GYTQVEGGRS KRDYQQQQYV PRGSHQNQRG HRGARRGYSN APRGGRGGGG GYSNGRYESY DNSGGNGYQR SHYNNRGRGR GGGGGGGGGN GHSYNNNHQD
401: SNVSVAS
001: MAATASSEAS EGPVMGLINK RLRALRKKYN RITQMEESIS QGKTLNKEQE EVLRSKPAVV ILIDELEKIR APLSAAVTEE ISLATQLNRA SSDQTTASEQ
101: KEVTDIPQEV SGGDDGAKLE DLVNFLYFGS LFDVKSQNEF TSIMLTRTHE RSCCLSYDYV TDDATDLLGD RDLDSISQLW SLMVSRPVDS SLSHKNALER
201: CVEHAKLWLA NSEQPIESNC NTSYAALREK LKKIMASDYF TTTPEMKAPV DVAAAAGNYT SYQVPVDVEA SGHYQQKEED ASNSKEVESV VNDQSQQDEH
301: QKVELVTEGE VVHGQQEQGY TQVGGAENAK RDYVPRGSYQ NQRGRRGARR GGGGYQNGRG GRGGGGGYQN GRYESYDQSG GNGYQRNYYN NRGRGRGGGG
401: GGGNGHSYNN YQDPNVAVAS
101: KEVTDIPQEV SGGDDGAKLE DLVNFLYFGS LFDVKSQNEF TSIMLTRTHE RSCCLSYDYV TDDATDLLGD RDLDSISQLW SLMVSRPVDS SLSHKNALER
201: CVEHAKLWLA NSEQPIESNC NTSYAALREK LKKIMASDYF TTTPEMKAPV DVAAAAGNYT SYQVPVDVEA SGHYQQKEED ASNSKEVESV VNDQSQQDEH
301: QKVELVTEGE VVHGQQEQGY TQVGGAENAK RDYVPRGSYQ NQRGRRGARR GGGGYQNGRG GRGGGGGYQN GRYESYDQSG GNGYQRNYYN NRGRGRGGGG
401: GGGNGHSYNN YQDPNVAVAS
Arabidopsis Description
Glycine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q9LFX8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.