CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74859	Soybean	peroxisome	92.45	52.97
KRH69381	Soybean	nucleus	69.81	33.26
KRH74755	Soybean	nucleus	66.51	31.61
HORVU7Hr1G119250.1	Barley	cytosol	15.09	29.91
VIT_01s0026g01470.t01	Wine grape	cytosol	55.19	26.35
GSMUA_Achr4P17410_001	Banana	nucleus	41.51	24.58
AT1G27090.1	Thale cress	nucleus	47.64	24.05
CDY46422	Canola	nucleus	42.92	22.52
Bra016305.1-P	Field mustard	nucleus	42.92	22.36
CDY16217	Canola	nucleus	42.92	22.36
CDY14707	Canola	nucleus	42.45	21.58
CDY52255	Canola	nucleus	41.51	21.41
GSMUA_Achr4P22310_001	Banana	nucleus	41.98	20.09
PGSC0003DMT400019928	Potato	nucleus	40.09	19.45
Solyc01g010440.2.1	Tomato	nucleus	39.62	19.0
PGSC0003DMT400045462	Potato	nucleus	38.21	18.93
Zm00001d033549_P003	Maize	mitochondrion, plasma membrane	28.77	13.5
Solyc05g006900.1.1	Tomato	cytosol, endoplasmic reticulum, golgi	20.75	13.37
TraesCS4B01G029200.1	Wheat	plastid	28.3	13.13
Os03t0688200-01	Rice	plastid	28.77	13.09
Zm00001d013528_P001	Maize	plasma membrane	27.83	12.91
EER93647	Sorghum	plastid	28.3	12.9
HORVU4Hr1G004410.3	Barley	plastid	26.89	12.75
TraesCS4D01G027100.2	Wheat	plastid	27.83	12.72
TraesCS4A01G283500.3	Wheat	plastid	27.83	12.61
TraesCS6A01G179400.1	Wheat	cytosol, nucleus, plasma membrane	25.94	7.47
TraesCS4B01G032400.1	Wheat	cytosol	24.06	7.35
TraesCS4D01G030100.1	Wheat	cytosol	25.0	7.25
TraesCS7A01G186400.1	Wheat	cytosol	23.58	7.18
TraesCS4A01G258800.2	Wheat	cytosol	27.36	7.16
TraesCS4A01G280000.1	Wheat	cytosol	15.09	5.19
TraesCS7A01G186200.1	Wheat	cytosol	8.49	4.62
TraesCS4A01G280100.1	Wheat	cytosol	8.49	4.56
TraesCS3B01G283500.1	Wheat	cytosol	4.25	3.69
HORVU4Hr1G004550.1	Barley	cytosol	0.94	3.03
TraesCS4B01G030200.1	Wheat	cytosol	0.47	0.84
TraesCS4D01G027500.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	0.0	0.0
HORVU7Hr1G119330.1	Barley	cytosol	0.0	0.0
HORVU1Hr1G071550.1	Barley	cytosol	0.0	0.0
HORVU3Hr1G093520.1	Barley	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.630.10	EntrezGene:100779117	MapMan:35.2	EMBL:ACUP02000539	InterPro:Cyt_P450_sf	EnsemblPlantsGene:GLYMA_01G122300
GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005488	GO:GO:0005506	GO:GO:0006629
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0010268	GO:GO:0016125
GO:GO:0016132	GO:GO:0016705	GO:GO:0020037	GO:GO:0055114	InterPro:IPR036396	UniProt:K7K3E8
EnsemblPlants:KRH75984	ProteinID:KRH75984	ProteinID:KRH75984.1	PANTHER:PTHR37736	SUPFAM:SSF48264	UniParc:UPI0002969102
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:42016081..42020066

Molecular Weight (calculated)

23854.1 Da

IEP (calculated)

4.954

GRAVY (calculated)

-0.358

Length

212 amino acids

Sequence
(BLAST)

001: MMLTKTHERG CCLTYDYVTN DDTDLLGEKD LDSISRLRGL LVSRPADSSF SHKNALHRCV EHAKLWLAKS EQPIGPNADV TYAALREKLN NIMSSEYFTT
101: TPEMKAPVEV DVAAAGGNYV SFHVPVHGFV VPVEVEQPVF QSQEKDEHDC FVVPFLSAVH LDENVYSGAL NINPWRWMEP ENEEKRNWRT SPFYAPFGGG
201: ARFYPGAELA CL

Best Arabidopsis Sequence Match ( AT1G27090.1 )
(BLAST)

001: MAATASSEAS EGPVMGLINK RLRALRKKYN RITQMEESIS QGKTLNKEQE EVLRSKPAVV ILIDELEKIR APLSAAVTEE ISLATQLNRA SSDQTTASEQ
101: KEVTDIPQEV SGGDDGAKLE DLVNFLYFGS LFDVKSQNEF TSIMLTRTHE RSCCLSYDYV TDDATDLLGD RDLDSISQLW SLMVSRPVDS SLSHKNALER
201: CVEHAKLWLA NSEQPIESNC NTSYAALREK LKKIMASDYF TTTPEMKAPV DVAAAAGNYT SYQVPVDVEA SGHYQQKEED ASNSKEVESV VNDQSQQDEH
301: QKVELVTEGE VVHGQQEQGY TQVGGAENAK RDYVPRGSYQ NQRGRRGARR GGGGYQNGRG GRGGGGGYQN GRYESYDQSG GNGYQRNYYN NRGRGRGGGG
401: GGGNGHSYNN YQDPNVAVAS

Arabidopsis Description

Glycine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q9LFX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.