Factsheet for TraesCS4A01G280100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G186200.1	Wheat	cytosol	93.67	94.87
TraesCS3B01G283500.1	Wheat	cytosol	48.1	77.87
AT3G24690.1	Thale cress	mitochondrion	4.56	11.39
KRH69381	Soybean	nucleus	11.14	9.89
KRH74755	Soybean	nucleus	10.89	9.64
KRH74859	Soybean	peroxisome	8.61	9.19
HORVU4Hr1G004550.1	Barley	cytosol	1.52	9.09
VIT_01s0026g01470.t01	Wine grape	cytosol	9.87	8.78
CDY16672	Canola	cytosol, mitochondrion, nucleus, plastid	3.54	8.7
Bra029489.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	3.54	8.7
Os03t0688200-01	Rice	plastid	10.13	8.58
CDX90857	Canola	nucleus	2.78	8.53
KRH75984	Soybean	cytosol	4.56	8.49
CDX94550	Canola	nucleus	3.54	8.48
TraesCS4A01G283500.3	Wheat	plastid	9.87	8.33
Solyc01g010440.2.1	Tomato	nucleus	9.11	8.14
GSMUA_Achr4P22310_001	Banana	nucleus	9.11	8.13
TraesCS7A01G186400.1	Wheat	cytosol	14.18	8.05
PGSC0003DMT400019928	Potato	nucleus	8.86	8.01
GSMUA_Achr4P17410_001	Banana	nucleus	7.09	7.82
Zm00001d033549_P003	Maize	mitochondrion, plasma membrane	8.86	7.74
CDY21298	Canola	nucleus	2.53	7.52
EER93647	Sorghum	plastid	8.61	7.31
Zm00001d013528_P001	Maize	plasma membrane	8.35	7.22
TraesCS4A01G280000.1	Wheat	cytosol	11.14	7.13
Bra000790.1-P	Field mustard	nucleus	2.28	7.03
Solyc05g006900.1.1	Tomato	cytosol, endoplasmic reticulum, golgi	5.82	6.99
TraesCS4A01G258800.2	Wheat	cytosol	13.92	6.79
PGSC0003DMT400045462	Potato	nucleus	7.09	6.54
TraesCS4D01G027500.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	7.09	5.38
TraesCS6A01G179400.1	Wheat	cytosol, nucleus, plasma membrane	8.1	4.35

Protein Annotations

EnsemblPlants:TraesCS4A01G280100.1	EnsemblPlantsGene:TraesCS4A01G280100	InterPro:DUF1618	PANTHER:PTHR33074	PFAM:PF07762	SEG:seg
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:588633613..588643252

Molecular Weight (calculated)

44556.4 Da

IEP (calculated)

6.105

GRAVY (calculated)

-0.108

Length

395 amino acids

Sequence
(BLAST)

001: MAMQDHPSPC GHHPQILLDK KCLVGELKNS ITTKSKNSKG VHLEVSFEAV DPPAISLCLV SCVDQTGDRL AAPPRILGVT RGFVLLAITF SDSVNRYLRF
101: IDYFVYKAGP DFASLHLLAR PYPSSFSPNM AAILPVSDNS EDFAVIFPHV EYFSLESRKH YTLHIYRSDT NDWHSQVACI AEDNETRNAR DKLLLHNTMS
201: VAYAEKGIVG WIDLWWGILL CNVLDKKPTI RFVPLPVPEP CDTSEFHLMF ENLTPRPHCH VTIFNDLIKC VELDFHVQDA FFNMKRAKDY GWMAKTWTRS
301: IYSDVWCDGL TIDTSEISFT DSSLPNLLPG MFDEENNLTW KKLTSAGPTL SLLDDNVIYI MAKESMCHPT AYVLTVDTKS LKLESGAQCA PQKTV

Best Arabidopsis Sequence Match ( AT4G18880.1 )
(BLAST)

001: MDENNHGVSS SSLPPFLTKT YEMVDDSSSD SIVSWSQSNK SFIVWNPPEF SRDLLPRFFK HNNFSSFIRQ LNTYGFRKAD PEQWEFANDD FVRGQPHLMK
101: NIHRRKPVHS HSLPNLQAQL NPLTDSERVR MNNQIERLTK EKEGLLEELH KQDEEREVFE MQVKELKERL QHMEKRQKTM VSFVSQVLEK PGLALNLSPC
201: VPETNERKRR FPRIEFFPDE PMLEENKTCV VVREEGSTSP SSHTREHQVE QLESSIAIWE NLVSDSCESM LQSRSMMTLD VDESSTFPES PPLSCIQLSV
301: DSRLKSPPSP RIIDMNCEPD GSKEQNTVAA PPPPPVAGAN DGFWQQFFSE NPGSTEQREV QLERKDDKDK AGVRTEKCWW NSRNVNAITE QLGHLTSSER
401: S

Arabidopsis Description

HSFA4AHSF A4A [Source:UniProtKB/TrEMBL;Acc:A0A178UUP9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.