Factsheet for Os03t0688200-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 4

Predictors

GFP

MS/MS

Papers

plastid: 21433289
nucleus: 23303719
plastid: 27992503
plasma membrane: 28056797

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G119250.1	Barley	cytosol	15.24	66.36
EER93647	Sorghum	plastid	60.94	61.08
TraesCS4B01G029200.1	Wheat	plastid	57.73	58.86
Zm00001d013528_P001	Maize	plasma membrane	56.87	57.99
TraesCS4D01G027100.2	Wheat	plastid	57.08	57.33
HORVU4Hr1G004410.3	Barley	plastid	54.72	57.05
TraesCS4A01G283500.3	Wheat	plastid	56.65	56.41
Zm00001d033549_P003	Maize	mitochondrion, plasma membrane	52.79	54.42
HORVU3Hr1G093520.1	Barley	cytosol	6.87	47.76
HORVU7Hr1G119330.1	Barley	cytosol	6.44	45.45
HORVU4Hr1G004550.1	Barley	cytosol	6.44	45.45
HORVU1Hr1G071550.1	Barley	cytosol	6.22	43.94
TraesCS4B01G030200.1	Wheat	cytosol	11.16	43.7
GSMUA_Achr4P22310_001	Banana	nucleus	39.91	41.99
GSMUA_Achr4P17410_001	Banana	nucleus	30.26	39.39
VIT_01s0026g01470.t01	Wine grape	cytosol	37.34	39.19
KRH74755	Soybean	nucleus	36.05	37.67
KRH69381	Soybean	nucleus	35.84	37.53
AT3G24690.1	Thale cress	mitochondrion	12.02	35.44
Solyc01g010440.2.1	Tomato	nucleus	33.26	35.07
PGSC0003DMT400019928	Potato	nucleus	32.83	35.01
PGSC0003DMT400045462	Potato	nucleus	31.76	34.58
CDX90857	Canola	nucleus	9.23	33.33
Solyc05g006900.1.1	Tomato	cytosol, endoplasmic reticulum, golgi	23.18	32.83
CDY21298	Canola	nucleus	8.8	30.83
CDX94550	Canola	nucleus	10.52	29.7
Bra029489.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	10.09	29.19
CDY16672	Canola	cytosol, mitochondrion, nucleus, plastid	10.09	29.19
KRH74859	Soybean	peroxisome	23.18	29.19
KRH75984	Soybean	cytosol	13.09	28.77
TraesCS6A01G179400.1	Wheat	cytosol, nucleus, plasma membrane	45.28	28.67
Bra000790.1-P	Field mustard	nucleus	7.73	28.12
TraesCS4A01G258800.2	Wheat	cytosol	42.27	24.32
TraesCS7A01G186400.1	Wheat	cytosol	32.83	21.98
TraesCS4B01G032400.1	Wheat	cytosol	32.4	21.76
TraesCS4D01G030100.1	Wheat	cytosol	33.69	21.48
TraesCS4A01G280000.1	Wheat	cytosol	24.68	18.64
TraesCS3B01G283500.1	Wheat	cytosol	6.65	12.7
TraesCS7A01G186200.1	Wheat	cytosol	8.8	10.51
TraesCS4A01G280100.1	Wheat	cytosol	8.58	10.13
TraesCS4D01G027500.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	11.16	10.0

Protein Annotations

EnsemblPlants:Os03t0688200-01	EnsemblPlantsGene:Os03g0688200	EntrezGene:4333766	ncoils:Coil	ProteinID:AAT81716.1	ProteinID:AAT85066.1
ProteinID:ABF98269.1	ProteinID:BAF12857.1	ProteinID:BAS85824.1	RefSeq:XP_015631325.1	SEG:seg	UniParc:UPI0000400337
UniProt:Q6AVI7	MapMan:35.2	:	:	:	:

Description

Conserved hypothetical protein. (Os03t0688200-01)

Coordinates

chr3:+:27458294..27463536

Molecular Weight (calculated)

48767.0 Da

IEP (calculated)

4.921

GRAVY (calculated)

-0.664

Length

466 amino acids

Sequence
(BLAST)

001: MAASPTGSSS SAPAAAAAAA AEATDGPTLS VVSKRLRALR KKHNRILQME ESLAGGRKLN KEQEGVLRSK PAVVALIDEL ERMRAPLAAA LAEELSSRPA
101: PSSSAAPPPP ASSSAAGAAD SSVVEDLLAL IYFGTLFDLK PQTEFVATMV ARAQERDCCI TYDYVTEDAA DLLHQSDLDK VSALAALAAS RPAAAVGVSH
201: RDALQSCAQH ARLWLRRADE PIHPESSITY AAVRAKLDKI MASDYYTAQP EMPEMGAAVD LSAAVQESMV VSPEAPAVEE SQAEGHKDEK EASEATEIYN
301: DNQPNVADAQ NVEDEAPVNP SEEFSAAEVE QEKFEADVEE QERNADQQFT SRRPYQNQRG GGGRGGGRRG YQNGGRGGRG GRGMGGGGYQ NGRGGGGGGG
401: YQNGRGGGEG GGYYYNEPGY YQQRGYSNRG RGGRSGGGNS YYNNQGGGSQ GGGHAHPGRV ELGANA

Best Arabidopsis Sequence Match ( AT1G27090.1 )
(BLAST)

001: MAATASSEAS EGPVMGLINK RLRALRKKYN RITQMEESIS QGKTLNKEQE EVLRSKPAVV ILIDELEKIR APLSAAVTEE ISLATQLNRA SSDQTTASEQ
101: KEVTDIPQEV SGGDDGAKLE DLVNFLYFGS LFDVKSQNEF TSIMLTRTHE RSCCLSYDYV TDDATDLLGD RDLDSISQLW SLMVSRPVDS SLSHKNALER
201: CVEHAKLWLA NSEQPIESNC NTSYAALREK LKKIMASDYF TTTPEMKAPV DVAAAAGNYT SYQVPVDVEA SGHYQQKEED ASNSKEVESV VNDQSQQDEH
301: QKVELVTEGE VVHGQQEQGY TQVGGAENAK RDYVPRGSYQ NQRGRRGARR GGGGYQNGRG GRGGGGGYQN GRYESYDQSG GNGYQRNYYN NRGRGRGGGG
401: GGGNGHSYNN YQDPNVAVAS

Arabidopsis Description

Glycine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q9LFX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.