Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90857 | Canola | nucleus | 81.2 | 83.72 |
| CDX94550 | Canola | nucleus | 63.91 | 51.52 |
| CDY16672 | Canola | cytosol, mitochondrion, nucleus, plastid | 61.65 | 50.93 |
| AT3G24690.1 | Thale cress | mitochondrion | 47.37 | 39.87 |
| TraesCS4B01G030200.1 | Wheat | cytosol | 20.3 | 22.69 |
| HORVU7Hr1G119330.1 | Barley | cytosol | 9.77 | 19.7 |
| HORVU1Hr1G071550.1 | Barley | cytosol | 9.77 | 19.7 |
| HORVU3Hr1G093520.1 | Barley | cytosol | 9.77 | 19.4 |
| HORVU4Hr1G004550.1 | Barley | cytosol | 8.27 | 16.67 |
| CDY46422 | Canola | nucleus | 40.6 | 13.37 |
| CDY16217 | Canola | nucleus | 39.85 | 13.02 |
| CDY14707 | Canola | nucleus | 39.85 | 12.71 |
| CDY52255 | Canola | nucleus | 38.35 | 12.41 |
| HORVU7Hr1G119250.1 | Barley | cytosol | 9.02 | 11.21 |
| GSMUA_Achr4P22310_001 | Banana | nucleus | 33.08 | 9.93 |
| EER93647 | Sorghum | plastid | 34.59 | 9.89 |
| Zm00001d033549_P003 | Maize | mitochondrion, plasma membrane | 33.08 | 9.73 |
| GSMUA_Achr4P17410_001 | Banana | nucleus | 25.56 | 9.5 |
| Zm00001d013528_P001 | Maize | plasma membrane | 32.33 | 9.41 |
| Os03t0688200-01 | Rice | plastid | 30.83 | 8.8 |
| TraesCS4D01G027100.2 | Wheat | plastid | 29.32 | 8.41 |
| TraesCS4A01G283500.3 | Wheat | plastid | 29.32 | 8.33 |
| TraesCS4B01G029200.1 | Wheat | plastid | 28.57 | 8.32 |
| HORVU4Hr1G004410.3 | Barley | plastid | 27.07 | 8.05 |
| TraesCS4A01G280000.1 | Wheat | cytosol | 27.07 | 5.83 |
| TraesCS4B01G032400.1 | Wheat | cytosol | 30.08 | 5.76 |
| TraesCS7A01G186400.1 | Wheat | cytosol | 30.08 | 5.75 |
| TraesCS6A01G179400.1 | Wheat | cytosol, nucleus, plasma membrane | 29.32 | 5.3 |
| TraesCS4D01G030100.1 | Wheat | cytosol | 27.82 | 5.06 |
| TraesCS4D01G027500.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 19.55 | 5.0 |
| TraesCS4A01G258800.2 | Wheat | cytosol | 28.57 | 4.69 |
| TraesCS3B01G283500.1 | Wheat | cytosol | 6.77 | 3.69 |
| TraesCS7A01G186200.1 | Wheat | cytosol | 7.52 | 2.56 |
| TraesCS4A01G280100.1 | Wheat | cytosol | 7.52 | 2.53 |
Protein Annotations
| EnsemblPlants:CDY21298 | EnsemblPlantsGene:GSBRNA2T00015629001 | PANTHER:PTHR37736 | ProteinID:CDY21298 | ProteinID:CDY21298.1 | SEG:seg |
| UniParc:UPI0004EDE765 | UniProt:A0A078G981 | MapMan:35.2 | : | : | : |
Description
BnaC03g29820DBnaC03g29820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G981]
Coordinates
chrLK032119:-:340427..340970
Molecular Weight (calculated)
14855.7 Da
IEP (calculated)
10.130
GRAVY (calculated)
-1.148
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATEGQQVM ALISKRLRTH RKKYNRITEM EESISQELEK LRLPPPSAAV SEEIISLPAK KNKKQKARKE IAPEEKDVTS KTDMEDCKVS DEVSKDDISP
101: CSESSQDVTP SPPSTSSGKA RRKKKSKKPQ TTN
101: CSESSQDVTP SPPSTSSGKA RRKKKSKKPQ TTN
001: MAAVEGQISA LISKRLRTLR KKYNRITDME ESISQGKTLN KEQEDTLRSK PIVSALIDEL VKLRIPPPSA AISEETSPPA KNKKQQKLSH ARKEVAEEEN
101: VTAKTDIEDC KISDDGINSE VSKDDTSPSS ESSQGVTPSP LSRKARRKRN AKKPQIPQ
101: VTAKTDIEDC KISDDGINSE VSKDDTSPSS ESSQGVTPSP LSRKARRKRN AKKPQIPQ
Arabidopsis Description
BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT1G27090.1); Has 51 Blast hits to 50 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). [Source:TAIR;Acc:AT3G24690]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.