Factsheet for Zm00001d033549_P003

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

plastid 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plasma membrane
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

plasma membrane: 23508561
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93647	Sorghum	plastid	80.53	78.28
Zm00001d013528_P001	Maize	plasma membrane	73.67	72.87
HORVU7Hr1G119250.1	Barley	cytosol	16.37	69.16
HORVU3Hr1G093520.1	Barley	cytosol	9.51	64.18
TraesCS4B01G029200.1	Wheat	plastid	56.86	56.24
HORVU4Hr1G004410.3	Barley	plastid	55.09	55.7
TraesCS4D01G027100.2	Wheat	plastid	55.75	54.31
TraesCS4A01G283500.3	Wheat	plastid	55.31	53.42
Os03t0688200-01	Rice	plastid	54.42	52.79
HORVU7Hr1G119330.1	Barley	cytosol	7.52	51.52
HORVU4Hr1G004550.1	Barley	cytosol	7.3	50.0
TraesCS4B01G030200.1	Wheat	cytosol	13.05	49.58
HORVU1Hr1G071550.1	Barley	cytosol	7.08	48.48
VIT_01s0026g01470.t01	Wine grape	cytosol	40.49	41.22
GSMUA_Achr4P22310_001	Banana	nucleus	38.05	38.83
GSMUA_Achr4P17410_001	Banana	nucleus	30.09	37.99
KRH74755	Soybean	nucleus	37.39	37.89
KRH69381	Soybean	nucleus	36.95	37.53
PGSC0003DMT400019928	Potato	nucleus	35.62	36.84
Solyc01g010440.2.1	Tomato	nucleus	35.84	36.65
PGSC0003DMT400045462	Potato	nucleus	33.63	35.51
AT3G24690.1	Thale cress	mitochondrion	12.39	35.44
CDX90857	Canola	nucleus	9.73	34.11
CDX94550	Canola	nucleus	12.39	33.94
CDY21298	Canola	nucleus	9.73	33.08
CDY16672	Canola	cytosol, mitochondrion, nucleus, plastid	11.73	32.92
Bra029489.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	11.73	32.92
Solyc05g006900.1.1	Tomato	cytosol, endoplasmic reticulum, golgi	23.23	31.91
KRH74859	Soybean	peroxisome	25.66	31.35
TraesCS6A01G179400.1	Wheat	cytosol, nucleus, plasma membrane	47.57	29.21
Bra000790.1-P	Field mustard	nucleus	8.19	28.91
KRH75984	Soybean	cytosol	13.5	28.77
TraesCS4A01G258800.2	Wheat	cytosol	46.02	25.68
TraesCS7A01G186400.1	Wheat	cytosol	37.61	24.43
TraesCS4B01G032400.1	Wheat	cytosol	36.06	23.49
TraesCS4D01G030100.1	Wheat	cytosol	36.73	22.71
TraesCS4A01G280000.1	Wheat	cytosol	27.21	19.94
TraesCS3B01G283500.1	Wheat	cytosol	5.97	11.07
TraesCS4D01G027500.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	11.95	10.38
TraesCS4A01G280100.1	Wheat	cytosol	7.74	8.86
TraesCS7A01G186200.1	Wheat	cytosol	7.52	8.72

Protein Annotations

EMBL:BT064059	EnsemblPlants:Zm00001d033549_P003	EnsemblPlants:Zm00001d033549_T003	EnsemblPlantsGene:Zm00001d033549	EntrezGene:100382366	PANTHER:PTHR37736
ProteinID:ONM07820.1	ProteinID:ONM07822.1	SEG:seg	UniParc:UPI0001949061	UniProt:C0P6Z0	MapMan:35.2

Description

No Description!

Coordinates

chr1:+:266748854..266756818

Molecular Weight (calculated)

48237.4 Da

IEP (calculated)

4.964

GRAVY (calculated)

-0.608

Length

452 amino acids

Sequence
(BLAST)

001: MATSPAASSS SAPTASAVAA ATMAVEATDG PVLSVVSKRL RALRKKYNRI TQMEESLAAG KTLNREQEEV LRSKPVVAAL IDELERLRPP LASALAEELS
101: SRPAPAPSAA SSSDSDSSVQ DLLALVYFGS LFDVKQQSDF VSLVYTRELE RSSCLTYDYV GDDPEDSLAE TDLNAVSALA SLAALRPPAA AGVSHRDALQ
201: ACAHHARLWL CRADEPIHPD STITYAGVRA KLDRIMASGY FTAQLEMRTP LDLAAAVASF GAGGVQVQES MVVSPQAPEA VEESQAVEGH KNEKEDSQAT
301: EIYNDHPVVD SEHVEDEVLV HPTDEVPPAE TEQEQETFDA DVKDQEQKDQ QFIQRRSYQN QRGGGRGGSR RGYPNGRGGR GGRGGGYQNG RGGYQNGRGG
401: AGGYYYESGY YQPRNYNRGR GGRSGGGNSY YNSHGGGAQG HHPGSVELGA NA

Best Arabidopsis Sequence Match ( AT1G27090.1 )
(BLAST)

001: MAATASSEAS EGPVMGLINK RLRALRKKYN RITQMEESIS QGKTLNKEQE EVLRSKPAVV ILIDELEKIR APLSAAVTEE ISLATQLNRA SSDQTTASEQ
101: KEVTDIPQEV SGGDDGAKLE DLVNFLYFGS LFDVKSQNEF TSIMLTRTHE RSCCLSYDYV TDDATDLLGD RDLDSISQLW SLMVSRPVDS SLSHKNALER
201: CVEHAKLWLA NSEQPIESNC NTSYAALREK LKKIMASDYF TTTPEMKAPV DVAAAAGNYT SYQVPVDVEA SGHYQQKEED ASNSKEVESV VNDQSQQDEH
301: QKVELVTEGE VVHGQQEQGY TQVGGAENAK RDYVPRGSYQ NQRGRRGARR GGGGYQNGRG GRGGGGGYQN GRYESYDQSG GNGYQRNYYN NRGRGRGGGG
401: GGGNGHSYNN YQDPNVAVAS

Arabidopsis Description

Glycine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q9LFX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.