Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G280000.1 | Wheat | cytosol | 81.81 | 96.92 |
| TraesCS4A01G258800.2 | Wheat | cytosol | 93.16 | 84.07 |
| TraesCS4D01G027500.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 43.09 | 60.58 |
| TraesCS4D01G027100.2 | Wheat | plastid | 27.63 | 43.53 |
| Zm00001d033549_P003 | Maize | mitochondrion, plasma membrane | 22.71 | 36.73 |
| EER93647 | Sorghum | plastid | 23.12 | 36.34 |
| Zm00001d013528_P001 | Maize | plasma membrane | 22.57 | 36.1 |
| Os03t0688200-01 | Rice | plastid | 21.48 | 33.69 |
| AT3G24690.1 | Thale cress | mitochondrion | 6.57 | 30.38 |
| Solyc05g006900.1.1 | Tomato | cytosol, endoplasmic reticulum, golgi | 13.54 | 30.09 |
| GSMUA_Achr4P17410_001 | Banana | nucleus | 14.23 | 29.05 |
| GSMUA_Achr4P22310_001 | Banana | nucleus | 17.1 | 28.22 |
| CDY21298 | Canola | nucleus | 5.06 | 27.82 |
| CDY16672 | Canola | cytosol, mitochondrion, nucleus, plastid | 6.02 | 27.33 |
| Bra029489.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 6.02 | 27.33 |
| CDX90857 | Canola | nucleus | 4.79 | 27.13 |
| KRH74755 | Soybean | nucleus | 16.55 | 27.13 |
| CDX94550 | Canola | nucleus | 6.02 | 26.67 |
| KRH69381 | Soybean | nucleus | 16.14 | 26.52 |
| KRH74859 | Soybean | peroxisome | 13.41 | 26.49 |
| PGSC0003DMT400019928 | Potato | nucleus | 15.73 | 26.32 |
| VIT_01s0026g01470.t01 | Wine grape | cytosol | 15.87 | 26.13 |
| Solyc01g010440.2.1 | Tomato | nucleus | 15.73 | 26.02 |
| KRH75984 | Soybean | cytosol | 7.25 | 25.0 |
| PGSC0003DMT400045462 | Potato | nucleus | 14.36 | 24.53 |
| Bra000790.1-P | Field mustard | nucleus | 3.97 | 22.66 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G030100.1 | EnsemblPlantsGene:TraesCS4D01G030100 | InterPro:DUF1618 | PANTHER:PTHR37736 | PFAM:PF07762 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4D:-:13356157..13362735
Molecular Weight (calculated)
81240.2 Da
IEP (calculated)
6.226
GRAVY (calculated)
-0.229
Length
731 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMQDHPSPC GRHPQILLDR KCLVGQLENS TTAKTKNSKG HHLEVSFKAV DPPAISLCLV SCVDQTGELL PVDPHILGEA GGSVLLAFTF FGSVHHLPFT
101: DYFVYKAGPN FPCLHLIPRP YPSSFEANLV AILPVNDNSE DFAVVFPHVE YFVLESRKHY TLHIYRSDAN DWHTQVANIA EDNETRKAKR KLLLHDAMSV
201: AYAENGIIGW IDLWWGILLC NVLDKKPIIR FVPLPVPEPC DASESHLTFE NLTPRPHRHV TIFNDLIKFV ELDFHVQDAF CNMKRGKDYG WMARTWSRSI
301: YSDIWHDGLT FDTSELSFSD SSLPNLLPEM FDDKNSLTWG NLTSAGPTLS LHDDNVIYIM AKESMCHRTA YVLAVNGKSL KLESGAHCSA ENMLWFEPTY
401: DPCVLFRSFG TTSESVKEFE TKGTISETKE GPALSVVSKR LRALRKKQDR IARMEESVAA GKVLNQDQKE VMHSKPTIAA LINELERLRV PLSTALTKEL
501: STVPAPAAGS SSFGSNLSIQ DLLALVYFGS LFYVKSPDEF ITTMVARKHE RSSCITYGYV WDDTVDLLTE NDLDAVSAVA ALATARPASA VGVSHHDALQ
601: ACAHHARLWL TRANAPIHPG SSVTYAAVRS KLDRIMASDY YTAHHGAESV QALMSMTVSP EAPSLKEYIA AEGHKEEEED SSHATEIYNG HQSNAADVQN
701: MVYTKRENSA AGNLDLEKLR QATYSAQLQT S
101: DYFVYKAGPN FPCLHLIPRP YPSSFEANLV AILPVNDNSE DFAVVFPHVE YFVLESRKHY TLHIYRSDAN DWHTQVANIA EDNETRKAKR KLLLHDAMSV
201: AYAENGIIGW IDLWWGILLC NVLDKKPIIR FVPLPVPEPC DASESHLTFE NLTPRPHRHV TIFNDLIKFV ELDFHVQDAF CNMKRGKDYG WMARTWSRSI
301: YSDIWHDGLT FDTSELSFSD SSLPNLLPEM FDDKNSLTWG NLTSAGPTLS LHDDNVIYIM AKESMCHRTA YVLAVNGKSL KLESGAHCSA ENMLWFEPTY
401: DPCVLFRSFG TTSESVKEFE TKGTISETKE GPALSVVSKR LRALRKKQDR IARMEESVAA GKVLNQDQKE VMHSKPTIAA LINELERLRV PLSTALTKEL
501: STVPAPAAGS SSFGSNLSIQ DLLALVYFGS LFYVKSPDEF ITTMVARKHE RSSCITYGYV WDDTVDLLTE NDLDAVSAVA ALATARPASA VGVSHHDALQ
601: ACAHHARLWL TRANAPIHPG SSVTYAAVRS KLDRIMASDY YTAHHGAESV QALMSMTVSP EAPSLKEYIA AEGHKEEEED SSHATEIYNG HQSNAADVQN
701: MVYTKRENSA AGNLDLEKLR QATYSAQLQT S
001: MAATASSEAS EGPVMGLINK RLRALRKKYN RITQMEESIS QGKTLNKEQE EVLRSKPAVV ILIDELEKIR APLSAAVTEE ISLATQLNRA SSDQTTASEQ
101: KEVTDIPQEV SGGDDGAKLE DLVNFLYFGS LFDVKSQNEF TSIMLTRTHE RSCCLSYDYV TDDATDLLGD RDLDSISQLW SLMVSRPVDS SLSHKNALER
201: CVEHAKLWLA NSEQPIESNC NTSYAALREK LKKIMASDYF TTTPEMKAPV DVAAAAGNYT SYQVPVDVEA SGHYQQKEED ASNSKEVESV VNDQSQQDEH
301: QKVELVTEGE VVHGQQEQGY TQVGGAENAK RDYVPRGSYQ NQRGRRGARR GGGGYQNGRG GRGGGGGYQN GRYESYDQSG GNGYQRNYYN NRGRGRGGGG
401: GGGNGHSYNN YQDPNVAVAS
101: KEVTDIPQEV SGGDDGAKLE DLVNFLYFGS LFDVKSQNEF TSIMLTRTHE RSCCLSYDYV TDDATDLLGD RDLDSISQLW SLMVSRPVDS SLSHKNALER
201: CVEHAKLWLA NSEQPIESNC NTSYAALREK LKKIMASDYF TTTPEMKAPV DVAAAAGNYT SYQVPVDVEA SGHYQQKEED ASNSKEVESV VNDQSQQDEH
301: QKVELVTEGE VVHGQQEQGY TQVGGAENAK RDYVPRGSYQ NQRGRRGARR GGGGYQNGRG GRGGGGGYQN GRYESYDQSG GNGYQRNYYN NRGRGRGGGG
401: GGGNGHSYNN YQDPNVAVAS
Arabidopsis Description
Glycine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q9LFX8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.