Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90857 | Canola | nucleus | 44.94 | 55.04 |
| Bra000790.1-P | Field mustard | nucleus | 40.51 | 50.0 |
| CDX94550 | Canola | nucleus | 50.63 | 48.48 |
| CDY21298 | Canola | nucleus | 39.87 | 47.37 |
| Bra029489.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 47.47 | 46.58 |
| CDY16672 | Canola | cytosol, mitochondrion, nucleus, plastid | 47.47 | 46.58 |
| HORVU1Hr1G071550.1 | Barley | cytosol | 15.82 | 37.88 |
| HORVU4Hr1G004550.1 | Barley | cytosol | 15.82 | 37.88 |
| HORVU3Hr1G093520.1 | Barley | cytosol | 15.19 | 35.82 |
| HORVU7Hr1G119330.1 | Barley | cytosol | 14.56 | 34.85 |
| TraesCS4B01G030200.1 | Wheat | cytosol | 24.05 | 31.93 |
| AT1G27090.1 | Thale cress | nucleus | 41.14 | 15.48 |
| GSMUA_Achr4P22310_001 | Banana | nucleus | 38.61 | 13.77 |
| EER93647 | Sorghum | plastid | 36.71 | 12.47 |
| Zm00001d033549_P003 | Maize | mitochondrion, plasma membrane | 35.44 | 12.39 |
| HORVU7Hr1G119250.1 | Barley | cytosol | 8.23 | 12.15 |
| Zm00001d013528_P001 | Maize | plasma membrane | 34.81 | 12.04 |
| Os03t0688200-01 | Rice | plastid | 35.44 | 12.02 |
| GSMUA_Achr4P17410_001 | Banana | nucleus | 27.22 | 12.01 |
| HORVU4Hr1G004410.3 | Barley | plastid | 32.28 | 11.41 |
| TraesCS4B01G029200.1 | Wheat | plastid | 32.28 | 11.16 |
| TraesCS4D01G027100.2 | Wheat | plastid | 32.28 | 10.99 |
| TraesCS4A01G283500.3 | Wheat | plastid | 31.65 | 10.68 |
| TraesCS4A01G280000.1 | Wheat | cytosol | 29.75 | 7.62 |
| TraesCS4D01G027500.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 24.68 | 7.5 |
| TraesCS4B01G032400.1 | Wheat | cytosol | 31.65 | 7.2 |
| TraesCS7A01G186400.1 | Wheat | cytosol | 31.65 | 7.18 |
| TraesCS6A01G179400.1 | Wheat | cytosol, nucleus, plasma membrane | 32.28 | 6.93 |
| TraesCS4D01G030100.1 | Wheat | cytosol | 30.38 | 6.57 |
| TraesCS4A01G258800.2 | Wheat | cytosol | 31.01 | 6.05 |
| TraesCS3B01G283500.1 | Wheat | cytosol | 8.86 | 5.74 |
| TraesCS7A01G186200.1 | Wheat | cytosol | 11.39 | 4.62 |
| TraesCS4A01G280100.1 | Wheat | cytosol | 11.39 | 4.56 |
Protein Annotations
| ArrayExpress:AT3G24690 | EnsemblPlants:AT3G24690.1 | EnsemblPlantsGene:AT3G24690 | EntrezGene:822066 | GO:GO:0008150 | ncoils:Coil |
| PANTHER:PTHR37736 | ProteinID:AEE76936.1 | ProteinID:BAB01218.1 | ProteinID:OAP04493.1 | RefSeq:AT3G24690 | RefSeq:AT3G24690-TAIR-G |
| RefSeq:NP_189112.1 | SEG:seg | TAIR:AT3G24690 | TAIR:AT3G24690.1 | Unigene:At.50224 | UniParc:UPI00000A65DD |
| UniProt:A0A178VHJ8 | UniProt:Q9LJ40 | MapMan:35.2 | : | : | : |
Description
BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT1G27090.1); Has 51 Blast hits to 50 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). [Source:TAIR;Acc:AT3G24690]
Coordinates
chr3:+:9020651..9021491
Molecular Weight (calculated)
17504.7 Da
IEP (calculated)
10.149
GRAVY (calculated)
-0.970
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVEGQISA LISKRLRTLR KKYNRITDME ESISQGKTLN KEQEDTLRSK PIVSALIDEL VKLRIPPPSA AISEETSPPA KNKKQQKLSH ARKEVAEEEN
101: VTAKTDIEDC KISDDGINSE VSKDDTSPSS ESSQGVTPSP LSRKARRKRN AKKPQIPQ
101: VTAKTDIEDC KISDDGINSE VSKDDTSPSS ESSQGVTPSP LSRKARRKRN AKKPQIPQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.