CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69381	Soybean	nucleus	93.95	94.16
KRH75984	Soybean	cytosol	31.61	66.51
VIT_01s0026g01470.t01	Wine grape	cytosol	64.57	64.86
AT1G27090.1	Thale cress	nucleus	53.81	57.14
KRH74859	Soybean	peroxisome	46.86	56.49
CDY16217	Canola	nucleus	50.45	55.28
CDY46422	Canola	nucleus	49.78	54.95
Bra016305.1-P	Field mustard	nucleus	49.55	54.3
CDY52255	Canola	nucleus	49.55	53.77
CDY14707	Canola	nucleus	50.22	53.72
PGSC0003DMT400019928	Potato	nucleus	51.35	52.4
Solyc01g010440.2.1	Tomato	nucleus	51.35	51.81
HORVU7Hr1G119250.1	Barley	cytosol	12.33	51.4
GSMUA_Achr4P17410_001	Banana	nucleus	40.58	50.56
GSMUA_Achr4P22310_001	Banana	nucleus	50.0	50.34
PGSC0003DMT400045462	Potato	nucleus	46.41	48.36
HORVU7Hr1G119330.1	Barley	cytosol	6.73	45.45
HORVU4Hr1G004550.1	Barley	cytosol	6.5	43.94
HORVU1Hr1G071550.1	Barley	cytosol	6.5	43.94
HORVU3Hr1G093520.1	Barley	cytosol	6.5	43.28
Zm00001d033549_P003	Maize	mitochondrion, plasma membrane	37.89	37.39
TraesCS4B01G030200.1	Wheat	cytosol	9.87	36.97
Os03t0688200-01	Rice	plastid	37.67	36.05
TraesCS4B01G029200.1	Wheat	plastid	36.32	35.45
Zm00001d013528_P001	Maize	plasma membrane	36.1	35.23
Solyc05g006900.1.1	Tomato	cytosol, endoplasmic reticulum, golgi	25.78	34.95
TraesCS4D01G027100.2	Wheat	plastid	36.1	34.7
HORVU4Hr1G004410.3	Barley	plastid	34.75	34.68
EER93647	Sorghum	plastid	36.1	34.62
TraesCS4A01G283500.3	Wheat	plastid	35.65	33.97
TraesCS6A01G179400.1	Wheat	cytosol, nucleus, plasma membrane	32.51	19.7
TraesCS4A01G258800.2	Wheat	cytosol	31.17	17.16
TraesCS4B01G032400.1	Wheat	cytosol	26.46	17.0
TraesCS4D01G030100.1	Wheat	cytosol	27.13	16.55
TraesCS7A01G186400.1	Wheat	cytosol	25.78	16.52
TraesCS4A01G280000.1	Wheat	cytosol	21.52	15.56
TraesCS3B01G283500.1	Wheat	cytosol	6.95	12.7
TraesCS7A01G186200.1	Wheat	cytosol	9.87	11.28
TraesCS4A01G280100.1	Wheat	cytosol	9.64	10.89
TraesCS4D01G027500.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	8.74	7.5

Protein Annotations

EMBL:ACUP02000066	EnsemblPlants:KRH74755	EnsemblPlantsGene:GLYMA_01G041300	EntrezGene:100819759	PANTHER:PTHR37736	ProteinID:KRH74755
ProteinID:KRH74755.1	SEG:seg	UniParc:UPI0002337714	UniProt:I1J5J5	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr1:-:4428651..4434734

Molecular Weight (calculated)

48843.0 Da

IEP (calculated)

4.781

GRAVY (calculated)

-0.816

Length

446 amino acids

Sequence
(BLAST)

001: MAATASNNDV AAAADGPVMS LINKRLRALR KKLNRILAME EAVTQGKPLN KEQEEVLRSK PSVLALIDEL EKLRQPLATA LSEELQNNGT SSQNSRETET
101: ETENETLAES SGSVEPNTNS TTNDVVVEDL LNLLYFGSLF DVKSDFASTM LTRTHERGCC LTYDYVTDDA TDLLGEKDLD SISALRGLLV SRPADSSFSH
201: KNALQRCLEH ARLWLTKSEQ PIEPDTDVTY AALREKLNKI MSSEYFITTP EMKAPVEVAA AAAGGNYVSF HVPVHGSVVP VEVEQPVFQS QEKDEGTANF
301: QGHGSEEDLS DHEGELQKDE VEAENAGEVV SAQHEQANQQ ADVEYNERDV EAKDQQSYPR RGYQNHRGGR GGGGRRGYSN GRGGRSGGRG GYQNGRNQYY
401: DQPGNYYPRN NYYNNRGRGG RGGGYYNNHG AGGQVNHVAG DVGVQS

Best Arabidopsis Sequence Match ( AT1G27090.1 )
(BLAST)

001: MAATASSEAS EGPVMGLINK RLRALRKKYN RITQMEESIS QGKTLNKEQE EVLRSKPAVV ILIDELEKIR APLSAAVTEE ISLATQLNRA SSDQTTASEQ
101: KEVTDIPQEV SGGDDGAKLE DLVNFLYFGS LFDVKSQNEF TSIMLTRTHE RSCCLSYDYV TDDATDLLGD RDLDSISQLW SLMVSRPVDS SLSHKNALER
201: CVEHAKLWLA NSEQPIESNC NTSYAALREK LKKIMASDYF TTTPEMKAPV DVAAAAGNYT SYQVPVDVEA SGHYQQKEED ASNSKEVESV VNDQSQQDEH
301: QKVELVTEGE VVHGQQEQGY TQVGGAENAK RDYVPRGSYQ NQRGRRGARR GGGGYQNGRG GRGGGGGYQN GRYESYDQSG GNGYQRNYYN NRGRGRGGGG
401: GGGNGHSYNN YQDPNVAVAS

Arabidopsis Description

Glycine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q9LFX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.