Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400019928 | Potato | nucleus | 94.57 | 95.65 |
| VIT_01s0026g01470.t01 | Wine grape | cytosol | 52.04 | 51.8 |
| KRH74755 | Soybean | nucleus | 51.81 | 51.35 |
| KRH69381 | Soybean | nucleus | 51.36 | 51.01 |
| AT1G27090.1 | Thale cress | nucleus | 48.19 | 50.71 |
| CDY16217 | Canola | nucleus | 44.57 | 48.4 |
| CDY46422 | Canola | nucleus | 44.12 | 48.27 |
| Bra016305.1-P | Field mustard | nucleus | 44.12 | 47.91 |
| HORVU7Hr1G119250.1 | Barley | cytosol | 11.54 | 47.66 |
| CDY14707 | Canola | nucleus | 44.34 | 47.0 |
| CDY52255 | Canola | nucleus | 42.53 | 45.74 |
| HORVU4Hr1G004550.1 | Barley | cytosol | 6.79 | 45.45 |
| Solyc05g006900.1.1 | Tomato | cytosol, endoplasmic reticulum, golgi | 33.03 | 44.38 |
| HORVU7Hr1G119330.1 | Barley | cytosol | 6.56 | 43.94 |
| GSMUA_Achr4P22310_001 | Banana | nucleus | 43.67 | 43.57 |
| HORVU3Hr1G093520.1 | Barley | cytosol | 6.56 | 43.28 |
| HORVU1Hr1G071550.1 | Barley | cytosol | 6.33 | 42.42 |
| GSMUA_Achr4P17410_001 | Banana | nucleus | 33.26 | 41.06 |
| KRH75984 | Soybean | cytosol | 19.0 | 39.62 |
| TraesCS4B01G030200.1 | Wheat | cytosol | 10.18 | 37.82 |
| KRH74859 | Soybean | peroxisome | 30.54 | 36.49 |
| Zm00001d033549_P003 | Maize | mitochondrion, plasma membrane | 36.65 | 35.84 |
| Os03t0688200-01 | Rice | plastid | 35.07 | 33.26 |
| Zm00001d013528_P001 | Maize | plasma membrane | 34.39 | 33.26 |
| EER93647 | Sorghum | plastid | 34.39 | 32.69 |
| HORVU4Hr1G004410.3 | Barley | plastid | 33.03 | 32.66 |
| TraesCS4B01G029200.1 | Wheat | plastid | 33.71 | 32.6 |
| TraesCS4D01G027100.2 | Wheat | plastid | 33.94 | 32.33 |
| TraesCS4A01G283500.3 | Wheat | plastid | 33.48 | 31.62 |
| TraesCS6A01G179400.1 | Wheat | cytosol, nucleus, plasma membrane | 30.77 | 18.48 |
| TraesCS7A01G186400.1 | Wheat | cytosol | 25.57 | 16.24 |
| TraesCS4D01G030100.1 | Wheat | cytosol | 26.02 | 15.73 |
| TraesCS4B01G032400.1 | Wheat | cytosol | 24.43 | 15.56 |
| TraesCS4A01G258800.2 | Wheat | cytosol | 28.51 | 15.56 |
| TraesCS4A01G280000.1 | Wheat | cytosol | 19.0 | 13.61 |
| TraesCS3B01G283500.1 | Wheat | cytosol | 5.88 | 10.66 |
| TraesCS7A01G186200.1 | Wheat | cytosol | 8.14 | 9.23 |
| TraesCS4A01G280100.1 | Wheat | cytosol | 8.14 | 9.11 |
| TraesCS4D01G027500.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 9.28 | 7.88 |
Protein Annotations
| EnsemblPlants:Solyc01g010440.2.1 | EnsemblPlantsGene:Solyc01g010440.2 | PANTHER:PTHR37736 | SEG:seg | UniParc:UPI0002761AFB | UniProt:K4ATN9 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:5342392..5348166
Molecular Weight (calculated)
48856.8 Da
IEP (calculated)
4.919
GRAVY (calculated)
-0.718
Length
442 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTPVSELS DGPVLSVINK RLRALRKKHS RILQMEESRT KGKTLNKEQE ETLRSKSAVI AAIDELEKLR QPLAAAVVEE INLSTGQHQV SPAESAVNIS
101: IDSTDKGEPA REGVLVVEDL LNLLYFGSMF DVKSLQSDFT PTMLTRTMER ACCLSYDCMP DDESTDVMDL LGERDLDLIS MLSGLLVSRP VNSPLSHKHA
201: LQKCIEHAKL WLSKSEQPIE PNSDATYAGL RSKLDKIIAS LYFTTDPVKV EAAAGKYGSY SVPVEEHHVE AVPVDVPLQV DTPSVQYEQK EEAVSSQAIE
301: TNDNHISNNI ELQQGGQDIN QPAEPEEVVF EVEGVDNMKD ADFNEQQSVP RRSYQNQNYR GNRGGSVGDR RGYSNGRGGR GRGGSYQNGR NQYYDQSGNY
401: QQRNYNNYRG RGGRGTGGGG GYNHYTSGDQ AGSYSADLRY EM
101: IDSTDKGEPA REGVLVVEDL LNLLYFGSMF DVKSLQSDFT PTMLTRTMER ACCLSYDCMP DDESTDVMDL LGERDLDLIS MLSGLLVSRP VNSPLSHKHA
201: LQKCIEHAKL WLSKSEQPIE PNSDATYAGL RSKLDKIIAS LYFTTDPVKV EAAAGKYGSY SVPVEEHHVE AVPVDVPLQV DTPSVQYEQK EEAVSSQAIE
301: TNDNHISNNI ELQQGGQDIN QPAEPEEVVF EVEGVDNMKD ADFNEQQSVP RRSYQNQNYR GNRGGSVGDR RGYSNGRGGR GRGGSYQNGR NQYYDQSGNY
401: QQRNYNNYRG RGGRGTGGGG GYNHYTSGDQ AGSYSADLRY EM
001: MAATASSEAS EGPVMGLINK RLRALRKKYN RITQMEESIS QGKTLNKEQE EVLRSKPAVV ILIDELEKIR APLSAAVTEE ISLATQLNRA SSDQTTASEQ
101: KEVTDIPQEV SGGDDGAKLE DLVNFLYFGS LFDVKSQNEF TSIMLTRTHE RSCCLSYDYV TDDATDLLGD RDLDSISQLW SLMVSRPVDS SLSHKNALER
201: CVEHAKLWLA NSEQPIESNC NTSYAALREK LKKIMASDYF TTTPEMKAPV DVAAAAGNYT SYQVPVDVEA SGHYQQKEED ASNSKEVESV VNDQSQQDEH
301: QKVELVTEGE VVHGQQEQGY TQVGGAENAK RDYVPRGSYQ NQRGRRGARR GGGGYQNGRG GRGGGGGYQN GRYESYDQSG GNGYQRNYYN NRGRGRGGGG
401: GGGNGHSYNN YQDPNVAVAS
101: KEVTDIPQEV SGGDDGAKLE DLVNFLYFGS LFDVKSQNEF TSIMLTRTHE RSCCLSYDYV TDDATDLLGD RDLDSISQLW SLMVSRPVDS SLSHKNALER
201: CVEHAKLWLA NSEQPIESNC NTSYAALREK LKKIMASDYF TTTPEMKAPV DVAAAAGNYT SYQVPVDVEA SGHYQQKEED ASNSKEVESV VNDQSQQDEH
301: QKVELVTEGE VVHGQQEQGY TQVGGAENAK RDYVPRGSYQ NQRGRRGARR GGGGYQNGRG GRGGGGGYQN GRYESYDQSG GNGYQRNYYN NRGRGRGGGG
401: GGGNGHSYNN YQDPNVAVAS
Arabidopsis Description
Glycine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q9LFX8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.