Factsheet for PGSC0003DMT400092022

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001613
PGSC0003DMT400009464
PGSC0003DMT400057824
PGSC0003DMT400060435	nucleus
PGSC0003DMT400061471	nucleus
PGSC0003DMT400067677	nucleus
PGSC0003DMT400075974	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63370.1	PGSC0003DMT400009464	AT2G26430.1	20706207
AT5G63370.1	PGSC0003DMT400057824	AT2G26430.1	20706207
AT5G63370.1	PGSC0003DMT400060435	AT2G37340.1	23404887
AT5G63370.1	PGSC0003DMT400061471	AT2G37340.1	23404887
AT5G63370.1	PGSC0003DMT400060435	AT2G37340.1	23404887
AT5G63370.1	PGSC0003DMT400061471	AT2G37340.1	23404887
AT5G63370.1	PGSC0003DMT400001613	AT3G47620.1	21798944
AT5G63370.1	PGSC0003DMT400067677	AT4G31580.1	23404887
AT5G63370.1	PGSC0003DMT400075974	AT4G31580.1	23404887
AT5G63370.1	PGSC0003DMT400067677	AT4G31580.1	23404887
AT5G63370.1	PGSC0003DMT400075974	AT4G31580.1	23404887

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400086876	Potato	cytosol	93.55	64.44
CDY45733	Canola	cytosol, plastid, vacuole	37.33	53.29
CDY69065	Canola	cytosol	37.33	53.29
Bra029230.1-P	Field mustard	cytosol, mitochondrion	62.67	41.46
PGSC0003DMT400075349	Potato	cytosol	42.86	31.63
PGSC0003DMT400071215	Potato	cytosol	41.01	29.37
PGSC0003DMT400025910	Potato	cytosol	41.01	28.25
PGSC0003DMT400047738	Potato	cytosol	38.25	27.39
PGSC0003DMT400065635	Potato	cytosol	35.02	24.36
Bra019550.1-P	Field mustard	nucleus	62.21	24.24
CDY56886	Canola	nucleus	56.22	23.83
PGSC0003DMT400077428	Potato	cytosol	31.8	23.15
CDY37922	Canola	nucleus	56.22	23.02
AT5G63370.1	Thale cress	nucleus	60.37	21.41
PGSC0003DMT400032131	Potato	cytosol	37.79	19.57
PGSC0003DMT400051979	Potato	cytosol	37.79	18.76
PGSC0003DMT400044987	Potato	nucleus	65.9	17.94
PGSC0003DMT400034649	Potato	nucleus	66.36	17.54
PGSC0003DMT400047517	Potato	cytosol	35.48	17.11

Protein Annotations

Gene3D:1.10.510.10	MapMan:50.2.7	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	UniProt:M1DNX5	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400041593	PGSC:PGSC0003DMG400041593	EnsemblPlants:PGSC0003DMT400092022
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF332	InterPro:Prot_kinase_dom	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002957894	:	:	:

Description

Cdk10/11 [Source:PGSC_GENE;Acc:PGSC0003DMG400041593]

Coordinates

chr8:+:4908518..4909171

Molecular Weight (calculated)

25352.2 Da

IEP (calculated)

9.949

GRAVY (calculated)

-0.296

Length

217 amino acids

Sequence
(BLAST)

001: MEYLENDLQV LTEKRRFSQR KIKCLMLQLL EGVKYLHYNW IIHRDLKTSN LLINEKCELK IADFGLARRT QSGPPLKPYT QEVVTLWYRS PELLMGMKKY
101: SNAIDMWSIG CIMAELLTNK PIFDGKSEID QINKIFGILG TLDEKIWPGF TKLCGLNKVK FVNKKHNYSL RKRFPSISFT DVVLSNSGID LLNKFLTYDP
201: NKRITAEAAL KHAWFRE

Best Arabidopsis Sequence Match ( AT1G67580.1 )
(BLAST)

001: MAAGRNIRYP DHELRDQESN SRFSRRDSAY ANEDYNHVRN GAIDNGKGRV SNLRHGDRDR IKSGARQEEN KMVSSGFRLS KSNPGSREVF IDLGPKRCGF
101: SARSVDREPG ELSSESGSDD LIESESLAKV NGVVKEVENR AQSPVEKKRK FSPIVWDRDD HERSNLSRNE KPVEVTPLPP PPPLVKRSSQ SPSVSCGGNS
201: HYSPAKSDMH QDPVEVGVSA VSMPALSPSV EMSSLCVVEQ SSNAEQDDKQ EHATHLEEDE NMPTRHISSS RWAAGNSSPT DEVEIVEEVG EKKRRKKPFP
301: VQGRFRNTSQ TPEVGELVRE GYRSSDSDER GHHSLPGSRD DFEERDAVKS DKMEIDEEEH RRENSVDSLS ETDSDDEYVR HETPEPASTP LRSINMLQGC
401: RSVDEFERLN KIDEGTYGVV YRAKDKKTGE IVALKKVKME KEREGFPLTS LREINILLSF HHPSIVDVKE VVVGSSLDSI FMVMEYMEHD LKALMETMKQ
501: RFSQSEVKCL MLQLLEGVKY LHDNWVLHRD LKTSNLLLNN RGELKICDFG LARQYGSPLK PYTHLVVTLW YRAPELLLGA KQYSTAIDMW SLGCIMAELL
601: MKAPLFNGKT EFDQLDKIFR ILGTPNESIW PGFSKLPGVK VNFVKHQYNL LRKKFPATSF TGAPVLSDAG FDLLNKLLTY DPERRITVNE ALKHDWFREV
701: PLPKSKDFMP TFPAQHAQDR RGRRMVKSPD PLEEQRRKEL TQTELGSGGL FG

Arabidopsis Description

Protein kinase superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9CAG1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.