Factsheet for PGSC0003DMT400047738

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g070140.1.1	Tomato	cytosol	85.81	88.44
PGSC0003DMT400075349	Potato	cytosol	79.21	81.63
GSMUA_Achr11P...	Banana	cytosol	72.94	78.65
TraesCS6B01G105100.1	Wheat	cytosol	74.26	76.79
TraesCS6A01G078200.1	Wheat	cytosol	73.93	76.45
TraesCS4B01G353600.1	Wheat	cytosol	73.93	76.19
TraesCS5A01G521700.1	Wheat	cytosol	73.6	75.85
Zm00001d053930_P001	Maize	cytosol	72.94	75.68
EES04403	Sorghum	cytosol	71.95	74.4
Zm00001d048497_P002	Maize	cytosol	72.61	72.61
KXG40336	Sorghum	cytosol	70.3	72.45
TraesCS4D01G347600.1	Wheat	cytosol	73.93	68.5
PGSC0003DMT400077428	Potato	cytosol	66.67	67.79
HORVU4Hr1G085830.4	Barley	cytosol	73.27	65.1
HORVU6Hr1G013680.2	Barley	cytosol, plastid	74.59	61.08
Zm00001d027373_P003	Maize	cytosol	73.27	60.49
Os02t0123100-01	Rice	mitochondrion	74.26	59.84
PGSC0003DMT400071215	Potato	cytosol	53.14	53.14
PGSC0003DMT400025910	Potato	cytosol	50.16	48.25
PGSC0003DMT400086876	Potato	cytosol	40.92	39.37
PGSC0003DMT400092022	Potato	cytosol	27.39	38.25
PGSC0003DMT400065635	Potato	cytosol	33.66	32.69
PGSC0003DMT400032131	Potato	cytosol	39.6	28.64
PGSC0003DMT400051979	Potato	cytosol	33.0	22.88
PGSC0003DMT400047517	Potato	cytosol	33.66	22.67
PGSC0003DMT400044987	Potato	nucleus	41.91	15.93
PGSC0003DMT400034649	Potato	nucleus	41.91	15.47

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102582575	MapMan:13.1.1.2.1	MapMan:18.4.3.1.1	Gene3D:3.30.200.20	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488
GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1BLC9
PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400018558	PGSC:PGSC0003DMG400018558	EnsemblPlants:PGSC0003DMT400047738	PIRSF:PIRSF000654	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF323	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002964A27	:	:

Description

Cyclin-dependent protein kinase p34cdc2 [Source:PGSC_GENE;Acc:PGSC0003DMG400018558]

Coordinates

chr11:+:42450089..42457060

Molecular Weight (calculated)

34367.7 Da

IEP (calculated)

6.517

GRAVY (calculated)

-0.147

Length

303 amino acids

Sequence
(BLAST)

001: MGYLQYEKIG KIGEGTYGVV YKALVRATKE IVALKKIRLE QEDEGVPSTA IREISLLKEM QHGNIVRLLD VVHSEKRLYL VFEYLDLDLK KHMDSCPEFS
101: KDTGVVKSFV YQMLRGIAYC HSRRVLHRDL KPQNLLIDPR TNVLKLADFG LGRAFGIPVR TFTHEVVTLW YRAPEILLGS RHYSTPVDVW SAGCIFAEMV
201: NQQPLFPGDS EIDELFKIFR VVGTPNEDTW PGVTSLPDYK STFPKWPPKD LATVVPNLDT AGFDLLGLDT GIEERDGDPH SQLYMITIPG GMQATVKVYQ
301: VMF

Best Arabidopsis Sequence Match ( AT3G48750.1 )
(BLAST)

001: MDQYEKVEKI GEGTYGVVYK ARDKVTNETI ALKKIRLEQE DEGVPSTAIR EISLLKEMQH SNIVKLQDVV HSEKRLYLVF EYLDLDLKKH MDSTPDFSKD
101: LHMIKTYLYQ ILRGIAYCHS HRVLHRDLKP QNLLIDRRTN SLKLADFGLA RAFGIPVRTF THEVVTLWYR APEILLGSHH YSTPVDIWSV GCIFAEMISQ
201: KPLFPGDSEI DQLFKIFRIM GTPYEDTWRG VTSLPDYKSA FPKWKPTDLE TFVPNLDPDG VDLLSKMLLM DPTKRINARA ALEHEYFKDL GGMP

Arabidopsis Description

CDKA-1Cyclin-dependent kinase A-1 [Source:UniProtKB/Swiss-Prot;Acc:P24100]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.