Factsheet for PGSC0003DMT400086876

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001613
PGSC0003DMT400009464
PGSC0003DMT400057824
PGSC0003DMT400060435	nucleus
PGSC0003DMT400061471	nucleus
PGSC0003DMT400067677	nucleus
PGSC0003DMT400075974	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63370.1	PGSC0003DMT400009464	AT2G26430.1	20706207
AT5G63370.1	PGSC0003DMT400057824	AT2G26430.1	20706207
AT5G63370.1	PGSC0003DMT400060435	AT2G37340.1	23404887
AT5G63370.1	PGSC0003DMT400061471	AT2G37340.1	23404887
AT5G63370.1	PGSC0003DMT400060435	AT2G37340.1	23404887
AT5G63370.1	PGSC0003DMT400061471	AT2G37340.1	23404887
AT5G63370.1	PGSC0003DMT400001613	AT3G47620.1	21798944
AT5G63370.1	PGSC0003DMT400067677	AT4G31580.1	23404887
AT5G63370.1	PGSC0003DMT400075974	AT4G31580.1	23404887
AT5G63370.1	PGSC0003DMT400067677	AT4G31580.1	23404887
AT5G63370.1	PGSC0003DMT400075974	AT4G31580.1	23404887

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400092022	Potato	cytosol	64.44	93.55
Bra029230.1-P	Field mustard	cytosol, mitochondrion	62.22	59.76
CDY45733	Canola	cytosol, plastid, vacuole	26.03	53.95
CDY69065	Canola	cytosol	26.03	53.95
PGSC0003DMT400075349	Potato	cytosol	41.59	44.56
PGSC0003DMT400071215	Potato	cytosol	40.95	42.57
PGSC0003DMT400047738	Potato	cytosol	39.37	40.92
PGSC0003DMT400025910	Potato	cytosol	40.32	40.32
PGSC0003DMT400077428	Potato	cytosol	33.97	35.91
Bra019550.1-P	Field mustard	nucleus	61.59	34.83
CDY37922	Canola	nucleus	57.46	34.15
PGSC0003DMT400065635	Potato	cytosol	33.02	33.33
CDY56886	Canola	nucleus	53.33	32.81
AT5G63370.1	Thale cress	nucleus	60.95	31.37
PGSC0003DMT400032131	Potato	cytosol	36.19	27.21
PGSC0003DMT400044987	Potato	nucleus	66.03	26.1
PGSC0003DMT400034649	Potato	nucleus	66.35	25.46
PGSC0003DMT400051979	Potato	cytosol	34.6	24.94
PGSC0003DMT400047517	Potato	cytosol	33.65	23.56

Protein Annotations

Gene3D:1.10.510.10	MapMan:13.1.1.2.7	MapMan:18.4.3.1.7	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1DCP1	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400036447
PGSC:PGSC0003DMG400036447	EnsemblPlants:PGSC0003DMT400086876	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR24056	PANTHER:PTHR24056:SF332	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	UniParc:UPI000295BF5A	:	:	:	:

Description

Cdk10/11 [Source:PGSC_GENE;Acc:PGSC0003DMG400036447]

Coordinates

chr8:+:4905365..4906312

Molecular Weight (calculated)

36396.5 Da

IEP (calculated)

9.907

GRAVY (calculated)

-0.313

Length

315 amino acids

Sequence
(BLAST)

001: MVQGCRSVEK FERLNKIGEG TYGVVYKARE KKTGEIVALK KLKISKKDEE EGFPLTFIRE INILLTCRHP SIVYVKEVVV GATTTKLNND DVFYIVMEYL
101: ENDLQLLIEK MNRRFSQREV KSLMVQLLEG VKYLHDNWII HRDLKTSNLL INDKGELKIA DFGLARRTQS GPPLKPYTQE VVTLWYRSPE LLMGMKNYSN
201: AIDMWSIGCI MAELLTNKPI FDGKSKIDQI NKIFGILGTP DEKIWPGFTK LCGLNKVKFV NKKHNYSLRK RFPSISFTDT VLSNSGFDLL NKFLTYDPNK
301: RITAEAALKH AWFRE

Best Arabidopsis Sequence Match ( AT5G63370.2 )
(BLAST)

001: MSPEPSYLAP VQPSEALLAV KHPVDDLEEG QLEEEQVMQE DVKEGLLEEE QVMQEPNIKT SRWGTGLTSP KEELISVNVS KTNRWNRSSL TPECEEVMVS
101: EEQQCYSSGS GSGHLSVEKL SADGNSGREY YSSDHDELEH EDQDSLTPGE MNMMFGSRSV NEFQKLNKIN EGTYGIVYKA RDEKTKEIVA LKKIKMKEDR
201: FEEEYGFPLT SLREINILLS CNHPAIVNVK EVVVGGKNDN DVYMVMEHLE HDLRGVMDRR KEPFSTSEVK CLMMQLLDGL KYLHTNWIIH RDLKPSNLLM
301: NNCGELKICD FGMARQYGSP IKPYTQMVIT QWYRPPELLL GAKEYSTAVD MWSVGCIMAE LLSQKPLFPG KSELDQLQKI FAVLGTPNEA IWPGFSSFPN
401: AKAKFPTQPY NMLRKKFPAI SFVGGQILSE RGFDLLNSLL TLDPEKRLTV EDALNHGWFH EVPLPKSKDF MPTYPPKR

Arabidopsis Description

CDKG1Cyclin-dependent kinase G1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGW5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.