Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0069g00800.t01 | Wine grape | nucleus | 90.71 | 91.71 |
| PGSC0003DMT400067677 | Potato | nucleus | 88.52 | 88.52 |
| KRH16160 | Soybean | endoplasmic reticulum | 84.15 | 86.52 |
| KRH04931 | Soybean | nucleus | 84.15 | 86.52 |
| Solyc08g069120.2.1 | Tomato | nucleus | 98.91 | 74.49 |
| AT4G31580.1 | Thale cress | nucleus | 80.33 | 73.5 |
| CDY45585 | Canola | nucleus | 78.14 | 72.96 |
| CDY20328 | Canola | nucleus | 78.14 | 72.96 |
| EES07659 | Sorghum | nucleus | 64.48 | 72.39 |
| AT2G24590.1 | Thale cress | nucleus | 76.5 | 71.43 |
| CDX72313 | Canola | nucleus | 76.5 | 71.07 |
| Bra032082.1-P | Field mustard | nucleus | 78.69 | 70.94 |
| CDY13444 | Canola | nucleus | 77.05 | 70.85 |
| Bra023994.1-P | Field mustard | nucleus | 77.05 | 70.85 |
| TraesCSU01G104300.1 | Wheat | nucleus | 67.76 | 68.13 |
| TraesCS7A01G152800.1 | Wheat | nucleus | 67.76 | 68.13 |
| Os06t0187900-02 | Rice | nucleus | 68.85 | 68.11 |
| GSMUA_Achr4P09230_001 | Banana | nucleus | 66.67 | 67.78 |
| TraesCS7B01G056600.2 | Wheat | nucleus | 67.76 | 67.76 |
| GSMUA_Achr8P24800_001 | Banana | nucleus | 67.21 | 67.58 |
| EER87987 | Sorghum | nucleus | 67.76 | 66.67 |
| TraesCS6B01G382600.1 | Wheat | nucleus | 70.49 | 66.49 |
| TraesCS6A01G349500.1 | Wheat | nucleus | 70.49 | 66.49 |
| TraesCS6D01G332000.1 | Wheat | nucleus | 69.95 | 65.98 |
| Os02t0789400-01 | Rice | nucleus | 65.03 | 64.32 |
| Os02t0610600-01 | Rice | nucleus | 66.12 | 60.5 |
| Zm00001d052062_P002 | Maize | extracellular | 53.01 | 54.49 |
| Zm00001d004066_P001 | Maize | cytosol, golgi, nucleus | 44.26 | 53.29 |
| Zm00001d045330_P001 | Maize | nucleus | 43.72 | 52.63 |
| HORVU6Hr1G083840.4 | Barley | plastid | 70.49 | 52.44 |
| Zm00001d045076_P001 | Maize | nucleus | 57.38 | 50.24 |
| TraesCS6B01G248500.1 | Wheat | nucleus | 67.76 | 49.8 |
| TraesCS6A01G219000.2 | Wheat | nucleus | 67.21 | 49.8 |
| Zm00001d017177_P007 | Maize | nucleus | 65.57 | 47.43 |
| Zm00001d018341_P007 | Maize | cytosol, nucleus, plasma membrane | 57.92 | 45.69 |
| TraesCS6D01G202100.1 | Wheat | nucleus | 66.67 | 45.35 |
| HORVU7Hr1G031320.1 | Barley | nucleus | 68.31 | 43.4 |
| Zm00001d051052_P001 | Maize | nucleus | 63.93 | 42.24 |
| Zm00001d028789_P001 | Maize | cytosol | 49.73 | 40.99 |
| OQU85289 | Sorghum | plastid | 67.76 | 39.12 |
Protein Annotations
| EntrezGene:102578563 | EntrezGene:102582109 | MapMan:16.4.6.4 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0008270 | InterPro:IPR000504 | InterPro:IPR001878 |
| InterPro:IPR012677 | UniProt:M1CW10 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00098 | EnsemblPlantsGene:PGSC0003DMG400029551 |
| PGSC:PGSC0003DMG400029551 | EnsemblPlants:PGSC0003DMT400075974 | PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF26 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 |
| UniParc:UPI0002952AD5 | RefSeq:XP_006355197.1 | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg | : |
Description
Arginine/serine-rich splicing factor [Source:PGSC_GENE;Acc:PGSC0003DMG400029551]
Coordinates
chr8:+:44883907..44889671
Molecular Weight (calculated)
20692.0 Da
IEP (calculated)
11.719
GRAVY (calculated)
-1.358
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRVYVGNLD PRVSERELED EFRIFGVIRS VWVARRPPGY AFIDFDDQRD AQDAIKELDG KNGWRVELSH NSRGGGGGGR GGGRGRSGGS DLKCYECGES
101: GHFARECRTR GGPGAGRRRS RSPPRYRRSP SYGRRSYSPR GRSPRRRSPS PRGRSYSRSP YRGREEAPYV NGNGLRERHR SRS
101: GHFARECRTR GGPGAGRRRS RSPPRYRRSP SYGRRSYSPR GRSPRRRSPS PRGRSYSRSP YRGREEAPYV NGNGLRERHR SRS
001: MSRVYVGNLD PRVTERELED EFRSFGVIRS VWVARRPPGY AFLDFEDSRD ARDAIREVDG KNGWRVEQSH NRGGGGGRGG GRGGGDGGRG RGGSDLKCYE
101: CGESGHFARE CRSRGGSGGR RRSRSRSRSP PRYRKSPTYG GRRSYSPRAR SPPPPRRRSP SPRGRNYSRS PPPYRARDEV PYANGNGLKD VRRSRS
101: CGESGHFARE CRSRGGSGGR RRSRSRSRSP PRYRKSPTYG GRRSYSPRAR SPPPPRRRSP SPRGRNYSRS PPPYRARDEV PYANGNGLKD VRRSRS
Arabidopsis Description
RSZ22ASerine/arginine-rich splicing factor RSZ22A [Source:UniProtKB/Swiss-Prot;Acc:Q9SJA6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.