Factsheet for Bra032082.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002976.1-P
Bra011368.1-P
Bra018581.1-P
Bra023895.1-P
Bra029020.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24590.1	Bra018581.1-P	AT1G09140.1	21798944
AT2G24590.1	Bra023895.1-P	AT3G21215.1	21798944
AT2G24590.1	Bra011368.1-P	AT4G32660.1	21798944
AT2G24590.1	Bra002976.1-P	AT5G54580.1	21798944
AT2G24590.1	Bra029020.1-P	AT5G54580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20328	Canola	nucleus	95.07	98.47
CDY45585	Canola	nucleus	95.07	98.47
AT2G24590.1	Thale cress	nucleus	78.82	81.63
KRH04931	Soybean	nucleus	70.94	80.9
KRH16160	Soybean	endoplasmic reticulum	70.94	80.9
Bra023994.1-P	Field mustard	nucleus	78.82	80.4
PGSC0003DMT400067677	Potato	nucleus	71.92	79.78
PGSC0003DMT400075974	Potato	nucleus	70.94	78.69
EES07659	Sorghum	nucleus	54.19	67.48
Os06t0187900-02	Rice	nucleus	59.11	64.86
TraesCS7B01G056600.2	Wheat	nucleus	57.64	63.93
TraesCS6D01G332000.1	Wheat	nucleus	61.08	63.92
GSMUA_Achr4P09230_001	Banana	nucleus	56.65	63.89
TraesCS7A01G152800.1	Wheat	nucleus	57.14	63.74
GSMUA_Achr8P24800_001	Banana	nucleus	57.14	63.74
TraesCSU01G104300.1	Wheat	nucleus	57.14	63.74
TraesCS6B01G382600.1	Wheat	nucleus	60.59	63.4
TraesCS6A01G349500.1	Wheat	nucleus	60.59	63.4
EER87987	Sorghum	nucleus	57.64	62.9
Os02t0789400-01	Rice	nucleus	57.14	62.7
Solyc08g069120.2.1	Tomato	nucleus	70.94	59.26
Os02t0610600-01	Rice	nucleus	55.66	56.5
Bra024624.1-P	Field mustard	nucleus	59.11	55.81
Zm00001d052062_P002	Maize	extracellular	44.34	50.56
HORVU6Hr1G083840.4	Barley	plastid	61.08	50.41
Zm00001d045330_P001	Maize	nucleus	37.44	50.0
Zm00001d004066_P001	Maize	cytosol, golgi, nucleus	36.95	49.34
VIT_10s0042g00400.t01	Wine grape	endoplasmic reticulum, extracellular	8.87	46.15
Zm00001d045076_P001	Maize	nucleus	47.29	45.93
TraesCS6A01G219000.2	Wheat	nucleus	55.66	45.75
TraesCS6B01G248500.1	Wheat	nucleus	55.66	45.38
Zm00001d017177_P007	Maize	nucleus	54.68	43.87
Zm00001d018341_P007	Maize	cytosol, nucleus, plasma membrane	48.77	42.67
Zm00001d051052_P001	Maize	nucleus	57.14	41.88
TraesCS6D01G202100.1	Wheat	nucleus	55.17	41.64
HORVU7Hr1G031320.1	Barley	nucleus	57.14	40.28
Zm00001d028789_P001	Maize	cytosol	42.86	39.19
OQU85289	Sorghum	plastid	56.16	35.96

Protein Annotations

MapMan:16.4.6.4	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EnsemblPlantsGene:Bra032082	EnsemblPlants:Bra032082.1	EnsemblPlants:Bra032082.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0005829	GO:GO:0008270
InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	UniProt:M4ETF1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF26	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI0002544B67
InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:	:

Description

AT2G24590 (E=1e-045) | splicing factor, putative

Coordinates

chrA04:+:11004806..11010735

Molecular Weight (calculated)

22908.8 Da

IEP (calculated)

11.625

GRAVY (calculated)

-1.391

Length

203 amino acids

Sequence
(BLAST)

001: MPPMRFLMSR VYVGNLDPRV TERELEDEFR VYGVIKSVWV ARRPPGYAFL DFEDSRDARD AIRDLDGKNG WRVEESHNRG GGGGRGGRGG GDGGRGRGGS
101: DLKCYECGEP GHFARECRSR GGSGRRRSPS PRGRSPPRYR KSPTYGERRR SYSPRARSPP PPRRRSPSPR GRNYSRSPPP YRGRDEVPYA NGNGLKDVRR
201: SRS

Best Arabidopsis Sequence Match ( AT2G24590.1 )
(BLAST)

001: MSRVYVGNLD PRVTERELED EFRSFGVIRS VWVARRPPGY AFLDFEDSRD ARDAIREVDG KNGWRVEQSH NRGGGGGRGG GRGGGDGGRG RGGSDLKCYE
101: CGESGHFARE CRSRGGSGGR RRSRSRSRSP PRYRKSPTYG GRRSYSPRAR SPPPPRRRSP SPRGRNYSRS PPPYRARDEV PYANGNGLKD VRRSRS

Arabidopsis Description

RSZ22ASerine/arginine-rich splicing factor RSZ22A [Source:UniProtKB/Swiss-Prot;Acc:Q9SJA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.