Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d004066_P001 | Maize | cytosol, golgi, nucleus | 53.6 | 78.29 |
| Zm00001d045330_P001 | Maize | nucleus | 50.9 | 74.34 |
| EES07659 | Sorghum | nucleus | 52.7 | 71.78 |
| GSMUA_Achr8P24800_001 | Banana | nucleus | 47.75 | 58.24 |
| Os02t0789400-01 | Rice | nucleus | 48.2 | 57.84 |
| GSMUA_Achr4P09230_001 | Banana | nucleus | 46.4 | 57.22 |
| TraesCS6B01G382600.1 | Wheat | nucleus | 47.3 | 54.12 |
| TraesCS6D01G332000.1 | Wheat | nucleus | 46.85 | 53.61 |
| TraesCS6A01G349500.1 | Wheat | nucleus | 46.85 | 53.61 |
| PGSC0003DMT400067677 | Potato | nucleus | 43.24 | 52.46 |
| Zm00001d018341_P007 | Maize | cytosol, nucleus, plasma membrane | 54.05 | 51.72 |
| VIT_04s0069g00800.t01 | Wine grape | nucleus | 41.89 | 51.38 |
| Zm00001d045076_P001 | Maize | nucleus | 47.75 | 50.72 |
| PGSC0003DMT400075974 | Potato | nucleus | 40.99 | 49.73 |
| Zm00001d052062_P002 | Maize | extracellular | 39.64 | 49.44 |
| KRH16160 | Soybean | endoplasmic reticulum | 39.64 | 49.44 |
| KRH04931 | Soybean | nucleus | 39.64 | 49.44 |
| CDX72313 | Canola | nucleus | 40.09 | 45.18 |
| AT4G31580.1 | Thale cress | nucleus | 40.54 | 45.0 |
| AT2G24590.1 | Thale cress | nucleus | 39.64 | 44.9 |
| CDY13444 | Canola | nucleus | 40.09 | 44.72 |
| Bra023994.1-P | Field mustard | nucleus | 40.09 | 44.72 |
| CDY45585 | Canola | nucleus | 39.19 | 44.39 |
| CDY20328 | Canola | nucleus | 39.19 | 44.39 |
| Bra032082.1-P | Field mustard | nucleus | 39.19 | 42.86 |
| HORVU6Hr1G083840.4 | Barley | plastid | 46.85 | 42.28 |
| Zm00001d017177_P007 | Maize | nucleus | 45.05 | 39.53 |
| Solyc08g069120.2.1 | Tomato | nucleus | 41.44 | 37.86 |
| Zm00001d051052_P001 | Maize | nucleus | 45.5 | 36.46 |
| VIT_10s0042g00400.t01 | Wine grape | endoplasmic reticulum, extracellular | 1.8 | 10.26 |
Protein Annotations
| MapMan:16.4.6.4 | Gene3D:4.10.60.10 | UniProt:A0A1D6JZP0 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0008270 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR001878 | ProteinID:ONL97049.1 |
| PFAM:PF00098 | PFscan:PS50158 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF26 | InterPro:RBD_domain_sf | SMART:SM00343 |
| SUPFAM:SSF54928 | SUPFAM:SSF57756 | TMHMM:TMhelix | UniParc:UPI000843604C | EnsemblPlantsGene:Zm00001d028789 | EnsemblPlants:Zm00001d028789_P001 |
| EnsemblPlants:Zm00001d028789_T001 | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg | : | : |
Description
Serine/arginine-rich splicing factor RSZ22
Coordinates
chr1:+:46474470..46476763
Molecular Weight (calculated)
24870.7 Da
IEP (calculated)
11.233
GRAVY (calculated)
-0.364
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MARVYVGNLD SRVTSGELED EFRVFGVLRR RDAEDAISDL DGKNGWRVEL SRNSSGRGGR DRYGGSESKC YECGETGHFA RECRLRIASG GLGSGRRRSR
101: SRSRSRSGSP RYRRSRSRSR ISVDEAHAFI YMNIFLTMFF FFLFSCHANQ WALLPLFLRP VVRFAARVAE GGPAAAVATI LHRAGALPRN RGLERLVRDD
201: ALHGRGQDCI ASFVVGVMRC LC
101: SRSRSRSGSP RYRRSRSRSR ISVDEAHAFI YMNIFLTMFF FFLFSCHANQ WALLPLFLRP VVRFAARVAE GGPAAAVATI LHRAGALPRN RGLERLVRDD
201: ALHGRGQDCI ASFVVGVMRC LC
001: MTRVYVGNLD PRVTERELED EFKAFGVLRN VWVARRPPGY AFLEFDDERD ALDAISALDR KNGWRVELSH KDKGGRGGGG GRRGGIEDSK CYECGELGHF
101: ARECRRGRGS VRRRSPSPRR RRSPDYGYAR RSYSRSPPYR GSRRDSPRRR DSPYGRRSPY ANGV
101: ARECRRGRGS VRRRSPSPRR RRSPDYGYAR RSYSRSPPYR GSRRDSPRRR DSPYGRRSPY ANGV
Arabidopsis Description
RSZ21SRZ21 [Source:UniProtKB/TrEMBL;Acc:A0A178WC08]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.