Factsheet for Bra023994.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012098.1-P
Bra013829.1-P
Bra013830.1-P
Bra023114.1-P
Bra024624.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G31580.1	Bra024624.1-P	AT1G23860.1	18674533
AT4G31580.1	Bra023114.1-P	AT2G37340.1	18674533
AT4G31580.1	Bra012098.1-P	AT3G50670.1	10593939
AT4G31580.1	Bra012098.1-P	AT3G50670.1	9761791
AT4G31580.1	Bra013829.1-P	AT4G24740.1	10593939
AT4G31580.1	Bra013830.1-P	AT4G24740.1	10593939

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13444	Canola	nucleus	98.49	98.49
AT4G31580.1	Thale cress	nucleus	83.92	83.5
KRH16160	Soybean	endoplasmic reticulum	72.36	80.9
KRH04931	Soybean	nucleus	71.86	80.34
Bra032082.1-P	Field mustard	nucleus	80.4	78.82
PGSC0003DMT400067677	Potato	nucleus	72.36	78.69
PGSC0003DMT400075974	Potato	nucleus	70.85	77.05
EES07659	Sorghum	nucleus	59.8	73.01
GSMUA_Achr4P09230_001	Banana	nucleus	62.81	69.44
GSMUA_Achr8P24800_001	Banana	nucleus	62.81	68.68
Os06t0187900-02	Rice	nucleus	63.82	68.65
EER87987	Sorghum	nucleus	63.82	68.28
TraesCS6B01G382600.1	Wheat	nucleus	66.33	68.04
TraesCS6A01G349500.1	Wheat	nucleus	66.33	68.04
TraesCS6D01G332000.1	Wheat	nucleus	66.33	68.04
TraesCS7A01G152800.1	Wheat	nucleus	60.8	66.48
TraesCSU01G104300.1	Wheat	nucleus	60.8	66.48
TraesCS7B01G056600.2	Wheat	nucleus	60.3	65.57
Os02t0789400-01	Rice	nucleus	60.3	64.86
Os02t0610600-01	Rice	nucleus	59.8	59.5
Solyc08g069120.2.1	Tomato	nucleus	70.35	57.61
Bra024624.1-P	Field mustard	nucleus	61.81	57.21
Zm00001d052062_P002	Maize	extracellular	49.75	55.62
HORVU6Hr1G083840.4	Barley	plastid	66.33	53.66
Zm00001d004066_P001	Maize	cytosol, golgi, nucleus	40.7	53.29
Zm00001d045330_P001	Maize	nucleus	40.7	53.29
TraesCS6B01G248500.1	Wheat	nucleus	61.81	49.4
TraesCS6A01G219000.2	Wheat	nucleus	61.31	49.39
Zm00001d045076_P001	Maize	nucleus	51.76	49.28
Zm00001d017177_P007	Maize	nucleus	58.79	46.25
Zm00001d051052_P001	Maize	nucleus	62.81	45.13
TraesCS6D01G202100.1	Wheat	nucleus	60.8	44.98
Zm00001d018341_P007	Maize	cytosol, nucleus, plasma membrane	52.26	44.83
VIT_10s0042g00400.t01	Wine grape	endoplasmic reticulum, extracellular	8.54	43.59
HORVU7Hr1G031320.1	Barley	nucleus	60.3	41.67
Zm00001d028789_P001	Maize	cytosol	44.72	40.09
OQU85289	Sorghum	plastid	60.3	37.85

Protein Annotations

MapMan:16.4.6.4	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EnsemblPlantsGene:Bra023994	EnsemblPlants:Bra023994.1	EnsemblPlants:Bra023994.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005730	GO:GO:0008270
GO:GO:0016607	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	UniProt:M4E5E0	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF26
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756
UniParc:UPI0002540F76	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:

Description

AT4G31580 (E=2e-040) SRZ-22, SRZ22, RSZP22 | SRZ-22; protein binding

Coordinates

chrA03:+:28360692..28361671

Molecular Weight (calculated)

22863.6 Da

IEP (calculated)

11.749

GRAVY (calculated)

-1.510

Length

199 amino acids

Sequence
(BLAST)

001: MSRVYVGNLD PRVTERELED EFRVYGAIKR QALIHVWVAR RPPGYAFLDF EDPRDASDAI RDLDGKNGWR VEQSHNRGDR GGGRGGDRGG DRGGSDLKCY
101: ECGEPGHFAR ECRNRGGTGR RRSRSRSRSP RYRRSPSYGR RSYSPRARSP PPPPPRRRSP SPPPVRGRSY SRSPPPYRRR EELPYTNGNG LKDRRRSRS

Best Arabidopsis Sequence Match ( AT4G31580.1 )
(BLAST)

001: MSRVYVGNLD PRVTERELED EFRAFGVVRS VWVARRPPGY AFLDFEDPRD ARDAIRALDG KNGWRVEQSH NRGERGGGGR GGDRGGGGGG RGGRGGSDLK
101: CYECGETGHF ARECRNRGGT GRRRSKSRSR TPPRYRRSPS YGRRSYSPRA RSPPPPRRRS PSPPPARGRS YSRSPPPYRA REEVPYANGN GLKERRRSRS

Arabidopsis Description

RSZ22Serine/arginine-rich splicing factor RSZ22 [Source:UniProtKB/Swiss-Prot;Acc:O81126]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.