Factsheet for Bra012098.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018581.1-P
Bra023114.1-P
Bra023994.1-P
Bra024624.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50670.1	Bra018581.1-P	AT1G09140.1	21798944
AT3G50670.1	Bra024624.1-P	AT1G23860.1	10593939
AT3G50670.1	Bra024624.1-P	AT1G23860.1	9761791
AT3G50670.1	Bra023114.1-P	AT2G37340.1	18674533
AT3G50670.1	Bra023994.1-P	AT4G31580.1	10593939
AT3G50670.1	Bra023994.1-P	AT4G31580.1	9761791

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53849	Canola	nucleus, plastid	78.65	68.63
VIT_04s0023g01580.t01	Wine grape	nucleus	66.85	33.43
AT3G50670.1	Thale cress	nucleus	73.03	30.45
TraesCS1B01G146600.1	Wheat	nucleus	57.87	28.77
GSMUA_Achr10P...	Banana	nucleus	62.36	28.46
GSMUA_Achr7P08090_001	Banana	nucleus	60.67	26.09
KRH28659	Soybean	nucleus	66.85	24.69
KRH76798	Soybean	nucleus	66.29	24.53
Solyc02g085420.2.1	Tomato	nucleus	65.73	24.48
PGSC0003DMT400038558	Potato	nucleus	65.17	24.42
Os10t0115600-02	Rice	nucleus	61.24	23.54
EER95096	Sorghum	nucleus	60.67	22.31
HORVU1Hr1G046870.5	Barley	nucleus	58.43	21.62
EER91800	Sorghum	nucleus	58.99	21.6
TraesCS1D01G124800.1	Wheat	nucleus	57.87	21.5
TraesCS1D01G162500.1	Wheat	nucleus	57.87	21.41
TraesCS1A01G176500.1	Wheat	nucleus	57.87	21.41
TraesCS1A01G128600.1	Wheat	nucleus	57.3	21.21
TraesCS1B01G203600.1	Wheat	nucleus	57.3	21.21
HORVU1Hr1G030660.5	Barley	nucleus	57.87	20.68
Zm00001d014343_P002	Maize	nucleus	60.67	19.22
Bra000304.1-P	Field mustard	nucleus	16.29	9.03
GSMUA_Achr7P00820_001	Banana	cytosol	2.81	5.15
KRH69931	Soybean	cytosol, mitochondrion, nucleus	0.56	0.51

Protein Annotations

MapMan:16.4.1.1.1	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra012098	EnsemblPlants:Bra012098.1	EnsemblPlants:Bra012098.1-P	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR012677
UniProt:M4D6I9	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF12220	PANTHER:PTHR13952	PANTHER:PTHR13952:SF5	InterPro:RBD_domain_sf
SUPFAM:SSF54928	InterPro:U1snRNP70_N	UniParc:UPI00025417CD	SEG:seg	:	:

Description

AT3G50670 (E=3e-054) U1-70K, U1SNRNP | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K); RNA binding / nucleic acid binding / nucleotide binding

Coordinates

chrA07:-:10041600..10045213

Molecular Weight (calculated)

20155.9 Da

IEP (calculated)

8.191

GRAVY (calculated)

-0.941

Length

178 amino acids

Sequence
(BLAST)

001: MGDMNEPFMR NQNAAMGQSQ PTGLTPNLLK LFEPRPPLEF QPPPEKRKCP PYTGMAQYVC HFAEPGNPEY ASPKPEVETP AQKRERIHKS RLEKGVEKAA
101: EDLKNYYPNN DPNASGDPYK TLFVARLNYE TSESKIKREF EAYGPIKQVD ACGKESRVHL VCSSCGKESR VLQEPRVL

Best Arabidopsis Sequence Match ( AT3G50670.1 )
(BLAST)

001: MGDSGDPFLR NPNAAVQARA KVQNRANVLQ LKLMGQSHPT GLTNNLLKLF EPRPPLEYKP PPEKRKCPPY TGMAQFVSNF AEPGDPEYAP PKPEVELPSQ
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR

Arabidopsis Description

RNU1U1SNRNP [Source:UniProtKB/TrEMBL;Acc:A0A178VDW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.