Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G124800.1 | Wheat | nucleus | 91.62 | 68.48 |
| TraesCS1A01G128600.1 | Wheat | nucleus | 91.06 | 67.78 |
| VIT_04s0023g01580.t01 | Wine grape | nucleus | 65.92 | 66.29 |
| HORVU1Hr1G030660.5 | Barley | nucleus | 88.55 | 63.65 |
| Os10t0115600-02 | Rice | nucleus | 79.33 | 61.34 |
| GSMUA_Achr10P... | Banana | nucleus | 65.92 | 60.51 |
| Bra012098.1-P | Field mustard | cytosol | 28.77 | 57.87 |
| GSMUA_Achr7P08090_001 | Banana | nucleus | 65.92 | 57.0 |
| CDY53849 | Canola | nucleus, plastid | 32.4 | 56.86 |
| TraesCS1B01G203600.1 | Wheat | nucleus | 76.26 | 56.76 |
| EER95096 | Sorghum | nucleus | 74.86 | 55.37 |
| EER91800 | Sorghum | nucleus | 74.3 | 54.73 |
| GSMUA_Achr7P00820_001 | Banana | cytosol | 14.25 | 52.58 |
| CDY57127 | Canola | plasma membrane | 60.89 | 51.66 |
| CDX81371 | Canola | nucleus | 60.06 | 51.07 |
| AT3G50670.1 | Thale cress | nucleus | 60.34 | 50.59 |
| KRH76798 | Soybean | nucleus | 64.8 | 48.23 |
| Solyc02g085420.2.1 | Tomato | nucleus | 64.25 | 48.12 |
| PGSC0003DMT400038558 | Potato | nucleus | 63.41 | 47.79 |
| Zm00001d014343_P002 | Maize | nucleus | 74.86 | 47.69 |
| KRH28659 | Soybean | nucleus | 63.97 | 47.51 |
| CDY30756 | Canola | nucleus, plastid | 41.62 | 35.9 |
| KRH69931 | Soybean | cytosol, mitochondrion, nucleus | 16.76 | 30.77 |
| TraesCS5B01G297000.2 | Wheat | nucleus | 24.86 | 18.94 |
Protein Annotations
| MapMan:16.4.1.1.1 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0030619 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF12220 |
| PFscan:PS50102 | PANTHER:PTHR13952 | PANTHER:PTHR13952:SF5 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS1B01G146600 | EnsemblPlants:TraesCS1B01G146600.1 | InterPro:U1snRNP70_N | TIGR:cd12236 | SEG:seg |
| InterPro:snRNP70_RRM | : | : | : | : | : |
Description
No Description!
Coordinates
chr1B:+:206030204..206034961
Molecular Weight (calculated)
41691.8 Da
IEP (calculated)
10.659
GRAVY (calculated)
-1.573
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDYGSAMTR GNADGGSQGR PKGVPRANVQ QLKLMGQGHP TGLTPNLLKL FEARPMLEHK PPVQKRKLPS YTGMAQFVSR FAEPGDPEYA PPVPTCETKA
101: EKKDRIRKLK LEQGADKVAK ELQNYDPQSD PNTTSDPYKT LFVARLNYET SESRVKREFE AYGPIKRVRL VTDKDTNKPR GYAFIEYMHT RDMKNAYKQA
201: DGRKVDNKRV LVDVERGRTV PNWRPRRLGG GLGSSRICGA SADQKPPARE PLSVGRPRSE EPKRGDSRVD RDREKSRERV RERDRDENPR ERSHDRIREL
301: DSREERHHHR DRDRTRDRDR GRDREKDHGR DRDRDRRDRD RDRDRGRDHD REKDRGLS
101: EKKDRIRKLK LEQGADKVAK ELQNYDPQSD PNTTSDPYKT LFVARLNYET SESRVKREFE AYGPIKRVRL VTDKDTNKPR GYAFIEYMHT RDMKNAYKQA
201: DGRKVDNKRV LVDVERGRTV PNWRPRRLGG GLGSSRICGA SADQKPPARE PLSVGRPRSE EPKRGDSRVD RDREKSRERV RERDRDENPR ERSHDRIREL
301: DSREERHHHR DRDRTRDRDR GRDREKDHGR DRDRDRRDRD RDRDRGRDHD REKDRGLS
001: MGDSGDPFLR NPNAAVQARA KVQNRANVLQ LKLMGQSHPT GLTNNLLKLF EPRPPLEYKP PPEKRKCPPY TGMAQFVSNF AEPGDPEYAP PKPEVELPSQ
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR
Arabidopsis Description
RNU1U1SNRNP [Source:UniProtKB/TrEMBL;Acc:A0A178VDW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.