Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G112200.1 | Wheat | nucleus | 81.5 | 99.3 |
| TraesCS2A01G111600.2 | Wheat | mitochondrion, nucleus | 81.5 | 99.3 |
| HORVU2Hr1G019410.4 | Barley | mitochondrion, nucleus | 80.92 | 97.9 |
| Os07t0673500-01 | Rice | nucleus | 72.54 | 84.8 |
| TraesCS4B01G157000.1 | Wheat | mitochondrion, nucleus | 67.92 | 80.2 |
| TraesCS3B01G293100.1 | Wheat | cytosol | 54.91 | 74.51 |
| Bra018581.1-P | Field mustard | cytosol | 47.11 | 70.26 |
| CDY66028 | Canola | cytosol | 49.13 | 67.19 |
| VIT_14s0060g02290.t01 | Wine grape | nucleus | 54.91 | 65.97 |
| TraesCS1B01G244200.1 | Wheat | cytosol, mitochondrion, nucleus | 50.58 | 65.06 |
| Solyc01g099810.2.1 | Tomato | nucleus | 49.13 | 64.39 |
| CDX91319 | Canola | nucleus | 55.49 | 64.21 |
| KRG92904 | Soybean | nucleus | 50.29 | 63.04 |
| CDX97264 | Canola | nucleus | 55.49 | 62.95 |
| CDY22050 | Canola | nucleus | 55.78 | 62.46 |
| Bra018550.1-P | Field mustard | nucleus | 47.11 | 62.45 |
| PGSC0003DMT400029666 | Potato | nucleus | 56.65 | 62.22 |
| Bra036267.1-P | Field mustard | nucleus | 56.07 | 62.18 |
| AT1G02840.1 | Thale cress | nucleus | 54.34 | 62.05 |
| CDY50385 | Canola | nucleus | 55.2 | 62.01 |
| AT1G09140.1 | Thale cress | cytosol | 47.98 | 61.94 |
| VIT_07s0005g00320.t01 | Wine grape | nucleus | 54.62 | 61.36 |
| Solyc09g075090.1.1 | Tomato | nucleus | 53.18 | 60.33 |
| PGSC0003DMT400037966 | Potato | cytosol, extracellular, nucleus | 50.87 | 60.27 |
| KRG96443 | Soybean | nucleus | 54.34 | 60.06 |
| KRH68188 | Soybean | nucleus | 50.87 | 58.86 |
| AT4G02430.4 | Thale cress | nucleus | 49.13 | 58.22 |
| CDX95008 | Canola | nucleus | 46.82 | 51.1 |
| PGSC0003DMT400063701 | Potato | nucleus | 45.09 | 47.27 |
| Solyc06g009060.2.1 | Tomato | nucleus | 34.68 | 45.8 |
| TraesCS1B01G065900.2 | Wheat | nucleus | 26.59 | 26.98 |
| TraesCS3B01G151100.1 | Wheat | nucleus | 24.28 | 26.01 |
| TraesCS1B01G130200.3 | Wheat | nucleus | 19.94 | 24.04 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G130400.1 | EnsemblPlantsGene:TraesCS2B01G130400 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR43933 |
| PANTHER:PTHR43933:SF6 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGR:cd12599 | TIGR:cd12602 | MapMan:16.4.6.1 | : | : | : |
Description
No Description!
Coordinates
chr2B:+:97928673..97932746
Molecular Weight (calculated)
38551.0 Da
IEP (calculated)
11.262
GRAVY (calculated)
-1.052
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MHRDADRPNP HAACSIAWPL GRSSRPPSRK PYLLLFPFVP GRRRRRARSE PSPSSGCSKQ GRMSRRWSRT IYVGNLPGDI REREVEDLFY KYGRIVEIDL
101: KVPPRPPGFA FVEFEDPRDA EDAIHGRDGY NFDGNRLRVE LAHGGRANSS SLPNSYGGGG RRGGVSRHTE YRVLVTGLPS SASWQDLKDH MRKAGDVCFS
201: EVYREGGGTI GIVDYTNYDD MKYAIRKLDD TEFKNAFSRA PIRVKEYAGK SSRSYSRSRS RSRSGSYSRS PSPKKKPSRR SASRSRSRSV SSHSRSPSKG
301: RSPSRSPAKS RSPVAASPVV NGEAASPKRD PSKSPSRSRS PDAKSE
101: KVPPRPPGFA FVEFEDPRDA EDAIHGRDGY NFDGNRLRVE LAHGGRANSS SLPNSYGGGG RRGGVSRHTE YRVLVTGLPS SASWQDLKDH MRKAGDVCFS
201: EVYREGGGTI GIVDYTNYDD MKYAIRKLDD TEFKNAFSRA PIRVKEYAGK SSRSYSRSRS RSRSGSYSRS PSPKKKPSRR SASRSRSRSV SSHSRSPSKG
301: RSPSRSPAKS RSPVAASPVV NGEAASPKRD PSKSPSRSRS PDAKSE
001: MSSRSSRTVY VGNLPGDIRE REVEDLFSKY GPVVQIDLKV PPRPPGYAFV EFDDARDAED AIHGRDGYDF DGHRLRVELA HGGRRSSDDT RGSFNGGGRG
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRYGFT YD
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRYGFT YD
Arabidopsis Description
SR34Serine/arginine-rich-splicing factor SR34 [Source:UniProtKB/Swiss-Prot;Acc:O22315]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.