Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G124800.1 | Wheat | nucleus | 97.3 | 97.7 |
| TraesCS1B01G146600.1 | Wheat | nucleus | 67.78 | 91.06 |
| HORVU1Hr1G030660.5 | Barley | nucleus | 93.56 | 90.36 |
| Os10t0115600-02 | Rice | nucleus | 77.75 | 80.78 |
| EER95096 | Sorghum | nucleus | 74.22 | 73.76 |
| TraesCS1A01G176500.1 | Wheat | nucleus | 69.44 | 69.44 |
| EER91800 | Sorghum | nucleus | 70.06 | 69.34 |
| VIT_04s0023g01580.t01 | Wine grape | nucleus | 48.23 | 65.17 |
| GSMUA_Achr10P... | Banana | nucleus | 51.98 | 64.1 |
| Zm00001d014343_P002 | Maize | nucleus | 73.6 | 62.99 |
| GSMUA_Achr7P08090_001 | Banana | nucleus | 52.6 | 61.11 |
| Bra012098.1-P | Field mustard | cytosol | 21.21 | 57.3 |
| CDY53849 | Canola | nucleus, plastid | 24.12 | 56.86 |
| CDX81371 | Canola | nucleus | 47.19 | 53.92 |
| CDY57127 | Canola | plasma membrane | 46.99 | 53.55 |
| Solyc02g085420.2.1 | Tomato | nucleus | 53.01 | 53.35 |
| AT3G50670.1 | Thale cress | nucleus | 47.19 | 53.16 |
| PGSC0003DMT400038558 | Potato | nucleus | 51.77 | 52.42 |
| KRH28659 | Soybean | nucleus | 52.39 | 52.28 |
| KRH76798 | Soybean | nucleus | 52.18 | 52.18 |
| GSMUA_Achr7P00820_001 | Banana | cytosol | 10.19 | 50.52 |
| CDY30756 | Canola | nucleus, plastid | 31.18 | 36.14 |
| KRH69931 | Soybean | cytosol, mitochondrion, nucleus | 14.55 | 35.9 |
| TraesCS5A01G298000.1 | Wheat | nucleus | 21.83 | 23.6 |
Protein Annotations
| MapMan:16.4.1.1.1 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0030619 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF12220 |
| PFscan:PS50102 | PANTHER:PTHR13952 | PANTHER:PTHR13952:SF5 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS1A01G128600 | EnsemblPlants:TraesCS1A01G128600.1 | InterPro:U1snRNP70_N | TIGR:cd12236 | SEG:seg |
| InterPro:snRNP70_RRM | : | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:157829169..157834869
Molecular Weight (calculated)
56242.4 Da
IEP (calculated)
9.578
GRAVY (calculated)
-1.762
Length
481 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDYGSAMTR GNPDGGSQGR PKGVPRANVQ QLKLMGQGHP TGLTPNLLKL FEARPMLEHK PPVQKRKLPA YTGMAQFVSR FAEPGDPEYA PPVPTCETKA
101: EKKDRIRKLK LEQGADKVAK ELQNYDPQSD PNTTSDPYKT LFVARLNYET SESRVKREFE AYGPIKRVRL VTDKDTNKPR GYAFIEYMHT RDMKNAYKQA
201: DGRKVDNKRV IVDVERGRTV PNWRPRRLGG GLGSSRICGA SADQKPPARE PSSVGRPRSE EPKRGDSRVD RDREKSRDKV RERDRDENPR ERSHDRIRER
301: DSREERHHHR DRDRTRDRDR GRDREKDHGR DRDRDRRDRD RDRDRGRDHD REKDRGLSHD RHRERGRDRE RDHEPASYER DRAHLKDRDS EYNGEPKHDR
401: SMADYGKHYG SNQYEQHNSY GSYRYQVQGG HGHETESSKG HEHEYYQAQP NTEPEGPEEG EAYEEGDYQY HQAAEEQKTE A
101: EKKDRIRKLK LEQGADKVAK ELQNYDPQSD PNTTSDPYKT LFVARLNYET SESRVKREFE AYGPIKRVRL VTDKDTNKPR GYAFIEYMHT RDMKNAYKQA
201: DGRKVDNKRV IVDVERGRTV PNWRPRRLGG GLGSSRICGA SADQKPPARE PSSVGRPRSE EPKRGDSRVD RDREKSRDKV RERDRDENPR ERSHDRIRER
301: DSREERHHHR DRDRTRDRDR GRDREKDHGR DRDRDRRDRD RDRDRGRDHD REKDRGLSHD RHRERGRDRE RDHEPASYER DRAHLKDRDS EYNGEPKHDR
401: SMADYGKHYG SNQYEQHNSY GSYRYQVQGG HGHETESSKG HEHEYYQAQP NTEPEGPEEG EAYEEGDYQY HQAAEEQKTE A
001: MGDSGDPFLR NPNAAVQARA KVQNRANVLQ LKLMGQSHPT GLTNNLLKLF EPRPPLEYKP PPEKRKCPPY TGMAQFVSNF AEPGDPEYAP PKPEVELPSQ
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR
Arabidopsis Description
RNU1U1SNRNP [Source:UniProtKB/TrEMBL;Acc:A0A178VDW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.