Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G151100.1 | Wheat | nucleus | 97.53 | 97.83 |
| TraesCS3A01G308000.1 | Wheat | nucleus | 97.84 | 95.2 |
| Os01t0155600-01 | Rice | nucleus | 82.72 | 82.72 |
| EES00292 | Sorghum | nucleus | 69.14 | 75.68 |
| PGSC0003DMT400060435 | Potato | nucleus | 58.95 | 63.67 |
| KRH67593 | Soybean | endoplasmic reticulum | 54.94 | 62.02 |
| KRG95876 | Soybean | nucleus | 54.63 | 61.67 |
| CDX80835 | Canola | nucleus | 49.07 | 60.0 |
| KRH67596 | Soybean | nucleus | 54.94 | 59.53 |
| CDY11223 | Canola | nucleus | 47.84 | 58.94 |
| GSMUA_Achr10P... | Banana | nucleus | 58.95 | 58.77 |
| CDX79732 | Canola | nucleus | 52.47 | 58.02 |
| CDX78183 | Canola | nucleus | 50.31 | 57.6 |
| VIT_08s0040g02860.t01 | Wine grape | nucleus | 47.22 | 57.52 |
| AT3G53500.2 | Thale cress | mitochondrion, nucleus | 50.0 | 57.04 |
| CDX73550 | Canola | nucleus | 50.0 | 57.04 |
| GSMUA_Achr6P15450_001 | Banana | nucleus | 59.26 | 56.97 |
| Solyc05g054920.2.1 | Tomato | nucleus | 58.95 | 56.68 |
| Bra005756.1-P | Field mustard | nucleus | 40.12 | 56.52 |
| CDY07586 | Canola | mitochondrion, nucleus | 50.0 | 56.25 |
| KRG95883 | Soybean | nucleus | 51.54 | 56.23 |
| AT2G37340.1 | Thale cress | nucleus | 50.31 | 56.21 |
| Solyc09g005980.2.1 | Tomato | nucleus | 54.32 | 55.87 |
| CDY52755 | Canola | mitochondrion, nucleus | 50.0 | 55.67 |
| Bra003139.1-P | Field mustard | mitochondrion, nucleus | 50.0 | 55.67 |
| PGSC0003DMT400061471 | Potato | nucleus | 53.7 | 55.24 |
| Bra007004.1-P | Field mustard | nucleus | 50.31 | 54.88 |
| TraesCS1D01G111000.2 | Wheat | nucleus | 48.46 | 54.7 |
| TraesCS1D01G051900.1 | Wheat | nucleus | 57.72 | 54.68 |
| Bra023114.1-P | Field mustard | nucleus | 52.78 | 54.11 |
| CDY46773 | Canola | nucleus | 52.78 | 54.11 |
| KRH42195 | Soybean | endoplasmic reticulum | 38.58 | 45.45 |
| KRH58317 | Soybean | nucleus | 26.54 | 39.27 |
| TraesCS1D01G232100.2 | Wheat | cytosol, mitochondrion, nucleus | 26.85 | 34.25 |
| TraesCS3D01G260200.1 | Wheat | cytosol | 25.0 | 31.76 |
| TraesCS4D01G168700.1 | Wheat | mitochondrion, nucleus | 27.16 | 30.03 |
| TraesCS2D01G112200.1 | Wheat | nucleus | 25.62 | 29.23 |
Protein Annotations
| MapMan:16.4.6.5 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0008270 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFAM:PF00098 | PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF39 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | EnsemblPlantsGene:TraesCS3D01G134500 |
| EnsemblPlants:TraesCS3D01G134500.1 | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3D:-:93482623..93485024
Molecular Weight (calculated)
36350.0 Da
IEP (calculated)
11.850
GRAVY (calculated)
-1.566
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRYDERDRY GGNTRLYVGR LPSRTRTRDL EDLFGRYGRV RHVDMKHEFA FVEFSDPRDA DEARYNLDGR DFDGSRMIVE FAKGVPRGQG GGGDRDRGGR
101: GGDREYMGRG PPPGSGRCFN CGIDGHWARD CKAGDWKNRC YRCGDSGHIE RDCQNSPKNL KRGKSYSRSP SPRRGRVRDR SYSRSRSRSY SRSVSPRRDE
201: RRSRSPRDSR SPRRSPRDSL SPRRSPRNSR SPMKSPRGSR SPMRSPRDSR SPRRSASPAK GRARSPTPPG SRSPAPRDNS RSPMKADSPK NMSPAANGRS
301: LSPRDGEDNG HHRAPSGSAS PGGG
101: GGDREYMGRG PPPGSGRCFN CGIDGHWARD CKAGDWKNRC YRCGDSGHIE RDCQNSPKNL KRGKSYSRSP SPRRGRVRDR SYSRSRSRSY SRSVSPRRDE
201: RRSRSPRDSR SPRRSPRDSL SPRRSPRNSR SPMKSPRGSR SPMRSPRDSR SPRRSASPAK GRARSPTPPG SRSPAPRDNS RSPMKADSPK NMSPAANGRS
301: LSPRDGEDNG HHRAPSGSAS PGGG
001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
Arabidopsis Description
RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.