Factsheet for VIT_08s0040g02860.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g00250.t01
VIT_04s0023g01580.t01
VIT_05s0102g00080.t01
VIT_07s0005g00320.t01
VIT_10s0042g00400.t01
VIT_12s0142g00110.t01
VIT_13s0019g01060.t01
VIT_14s0030g00480.t01
VIT_19s0027g01660.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37340.1	VIT_07s0005g00320.t01	AT1G02840.1	18674533
AT2G37340.1	VIT_01s0026g00250.t01	AT1G23860.1	18674533
AT2G37340.1	VIT_19s0027g01660.t01	AT1G53720.1	16497658
AT2G37340.1	VIT_05s0102g00080.t01	AT2G43370.1	15987817
AT2G37340.1	VIT_04s0023g01580.t01	AT3G50670.1	18674533
AT2G37340.1	VIT_13s0019g01060.t01	AT3G55460.1	18674533
AT2G37340.1	VIT_13s0019g01060.t01	AT3G55460.1	21798944
AT2G37340.1	VIT_10s0042g00400.t01	AT4G31580.1	18674533
AT2G37340.1	VIT_14s0030g00480.t01	AT5G18810.1	18674533
AT2G37340.1	VIT_12s0142g00110.t01	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67593	Soybean	endoplasmic reticulum	67.29	62.37
KRG95876	Soybean	nucleus	66.17	61.32
KRG95883	Soybean	nucleus	64.66	57.91
KRH67596	Soybean	nucleus	65.04	57.86
PGSC0003DMT400061471	Potato	nucleus	65.41	55.24
Solyc09g005980.2.1	Tomato	nucleus	65.41	55.24
VIT_13s0067g03600.t01	Wine grape	nucleus	69.17	54.76
KXG21152	Sorghum	nucleus	63.16	53.85
GSMUA_Achr6P15450_001	Banana	nucleus	68.05	53.71
GSMUA_Achr10P...	Banana	nucleus	65.41	53.54
EES00292	Sorghum	nucleus	58.65	52.7
CDX79732	Canola	nucleus	57.89	52.56
CDX78183	Canola	nucleus	55.26	51.94
CDX73550	Canola	nucleus	55.26	51.76
Os05t0120100-01	Rice	mitochondrion, nucleus	62.78	51.7
CDX80835	Canola	nucleus	51.5	51.7
AT3G53500.2	Thale cress	mitochondrion, nucleus	54.89	51.41
CDY07586	Canola	mitochondrion, nucleus	55.64	51.39
CDY11223	Canola	nucleus	50.75	51.33
AT2G37340.1	Thale cress	nucleus	55.64	51.03
Os03t0285900-01	Rice	nucleus	63.16	50.91
CDY52755	Canola	mitochondrion, nucleus	55.64	50.86
Bra003139.1-P	Field mustard	mitochondrion, nucleus	55.64	50.86
Os01t0155600-01	Rice	nucleus	61.28	50.31
TraesCS1B01G065900.2	Wheat	nucleus	64.29	50.15
TraesCS1D01G051900.1	Wheat	nucleus	64.29	50.0
KRH58317	Soybean	nucleus	40.98	49.77
TraesCS1A01G049700.1	Wheat	nucleus	63.91	49.71
Bra007004.1-P	Field mustard	nucleus	55.26	49.49
Zm00001d037543_P001	Maize	nucleus	33.46	49.44
Bra023114.1-P	Field mustard	nucleus	58.27	49.05
CDY46773	Canola	nucleus	58.27	49.05
EES18924	Sorghum	nucleus	61.65	48.09
TraesCS3B01G151100.1	Wheat	nucleus	58.27	47.99
Zm00001d011004_P008	Maize	nucleus	60.53	47.63
Zm00001d011005_P005	Maize	nucleus	63.16	47.59
Bra005756.1-P	Field mustard	nucleus	40.98	47.39
TraesCS3D01G134500.1	Wheat	nucleus	57.52	47.22
TraesCS3A01G308000.1	Wheat	nucleus	58.27	46.55
TraesCS1A01G108000.2	Wheat	nucleus	48.12	46.04
TraesCS1D01G111000.2	Wheat	nucleus	49.62	45.99
HORVU1Hr1G009950.7	Barley	nucleus, plastid	63.53	45.92
TraesCS1B01G130200.3	Wheat	nucleus	48.87	45.3
HORVU1Hr1G024060.21	Barley	nucleus	50.75	45.15
KRH42195	Soybean	endoplasmic reticulum	45.49	44.0
Zm00001d035552_P001	Maize	endoplasmic reticulum, extracellular, golgi	60.53	43.4
KXG21387	Sorghum	nucleus	40.98	41.13
Os05t0162600-01	Rice	nucleus	41.35	32.54
OQU77498	Sorghum	nucleus	11.28	27.03
Zm00001d035551_P007	Maize	nucleus	38.72	26.28
VIT_14s0060g02290.t01	Wine grape	nucleus	28.2	26.04
VIT_16s0098g01020.t01	Wine grape	nucleus	24.06	25.6
VIT_07s0005g00320.t01	Wine grape	nucleus	27.82	24.03
KXG21391	Sorghum	nucleus	34.21	22.75
VIT_08s0040g02850.t01	Wine grape	cytosol, extracellular, mitochondrion, nucleus	0.75	3.33

Protein Annotations

EntrezGene:100258584	wikigene:100258584	MapMan:16.4.6.5	Gene3D:3.30.70.330	Gene3D:4.10.60.10	ProteinID:CCB57017
ProteinID:CCB57017.1	UniProt:F6HQW9	EMBL:FN596008	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	EntrezGene:LOC100258584
wikigene:LOC100258584	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158
PANTHER:PTHR23147	PANTHER:PTHR23147:SF21	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SUPFAM:SSF54928
SUPFAM:SSF57756	UniParc:UPI000210858A	ArrayExpress:VIT_08s0040g02860	EnsemblPlantsGene:VIT_08s0040g02860	EnsemblPlants:VIT_08s0040g02860.t01	RefSeq:XP_002277105
RefSeq:XP_002277105.1	RefSeq:XP_010653491.1	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:

Description

No Description!

Coordinates

chr8:+:13909139..13912315

Molecular Weight (calculated)

30403.7 Da

IEP (calculated)

11.052

GRAVY (calculated)

-1.720

Length

266 amino acids

Sequence
(BLAST)

001: MKHDFAFVEF SDPRDADDAR YNLNGRDFDG SRIIVEFAKG GPRGGSGGSR EYLGRGPPPG SGRCFNCGID GHWARDCKAG DWKNKCYRCG ERGHIERNCQ
101: NSPRKLSRHG RSYSRSPVRS RHGRSRSRSY SPSRSYSRSR SPPKRDRSIE RDKRSGSPRY RSPEPKRRST PTSKPRKRSP TPEDSRPQER ISPNVYKREQ
201: PEYSQSPREK SRSPVSSERD SPVARRYRSP SDANGRSRSQ SPRDERSPLD EDEDNNSRSP RGSESP

Best Arabidopsis Sequence Match ( AT3G53500.1 )
(BLAST)

001: MKRDYAFVEF SDPRDADDAR YYLDGRDFDG SRITVEASRG APRGSRDNGS RGPPPGSGRC FNCGVDGHWA RDCTAGDWKN KCYRCGERGH IERNCKNSPS
101: PKKARQGGSY SRSPVKSRSP RRRRSPSRSR SYSRGRSYSR SRSPVRREKS VEDRSRSPKA MERSVSPKGR DQSLSPDRKV IDASPKRGSD YDGSPKENGN
201: GRNSASPIVG GGESPVGLNG QDRSPIDDEA ELSRPSPKGS ESP

Arabidopsis Description

RS2Z32RSZ32 [Source:UniProtKB/TrEMBL;Acc:A0A178V7M8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.