Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os05t0120100-01 | Rice | mitochondrion, nucleus | 42.09 | 51.08 |
| Os03t0285900-01 | Rice | nucleus | 40.82 | 48.48 |
| Zm00001d011004_P008 | Maize | nucleus | 41.58 | 48.22 |
| KRG95876 | Soybean | nucleus | 34.95 | 47.74 |
| KRH67593 | Soybean | endoplasmic reticulum | 34.95 | 47.74 |
| TraesCS1B01G065900.2 | Wheat | nucleus | 41.33 | 47.51 |
| TraesCS1D01G051900.1 | Wheat | nucleus | 40.82 | 46.78 |
| TraesCS1A01G049700.1 | Wheat | nucleus | 40.82 | 46.78 |
| KRH67596 | Soybean | nucleus | 35.46 | 46.49 |
| PGSC0003DMT400060435 | Potato | nucleus | 35.46 | 46.33 |
| CDX79732 | Canola | nucleus | 34.18 | 45.73 |
| Zm00001d011005_P005 | Maize | nucleus | 41.07 | 45.61 |
| GSMUA_Achr10P... | Banana | nucleus | 37.76 | 45.54 |
| AT2G37340.1 | Thale cress | nucleus | 33.67 | 45.52 |
| Zm00001d035552_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 42.86 | 45.28 |
| CDX78183 | Canola | nucleus | 32.65 | 45.23 |
| KRG95883 | Soybean | nucleus | 34.18 | 45.12 |
| CDX73550 | Canola | nucleus | 32.65 | 45.07 |
| AT3G53500.2 | Thale cress | mitochondrion, nucleus | 32.14 | 44.37 |
| HORVU1Hr1G009950.7 | Barley | nucleus, plastid | 41.33 | 44.02 |
| Bra007004.1-P | Field mustard | nucleus | 33.16 | 43.77 |
| CDY07586 | Canola | mitochondrion, nucleus | 31.89 | 43.4 |
| Bra023114.1-P | Field mustard | nucleus | 34.69 | 43.04 |
| CDX80835 | Canola | nucleus | 29.08 | 43.02 |
| Bra003139.1-P | Field mustard | mitochondrion, nucleus | 31.89 | 42.96 |
| CDY52755 | Canola | mitochondrion, nucleus | 31.89 | 42.96 |
| CDY46773 | Canola | nucleus | 34.44 | 42.72 |
| CDY11223 | Canola | nucleus | 28.57 | 42.59 |
| Solyc05g054920.2.1 | Tomato | nucleus | 35.46 | 41.25 |
| Solyc09g005980.2.1 | Tomato | nucleus | 32.91 | 40.95 |
| GSMUA_Achr6P15450_001 | Banana | nucleus | 34.69 | 40.36 |
| PGSC0003DMT400061471 | Potato | nucleus | 32.4 | 40.32 |
| KRH42195 | Soybean | endoplasmic reticulum | 27.81 | 39.64 |
| VIT_08s0040g02860.t01 | Wine grape | nucleus | 26.28 | 38.72 |
| Bra005756.1-P | Field mustard | nucleus | 21.68 | 36.96 |
| Zm00001d037543_P001 | Maize | nucleus | 13.78 | 30.0 |
| KRH58317 | Soybean | nucleus | 15.82 | 28.31 |
| Zm00001d040672_P013 | Maize | nucleus | 19.39 | 25.94 |
| Zm00001d047498_P003 | Maize | nucleus | 18.37 | 25.26 |
| Zm00001d041673_P001 | Maize | cytosol | 6.63 | 22.81 |
| Zm00001d037925_P006 | Maize | cytosol, nucleus, plastid | 16.84 | 19.08 |
| Zm00001d009821_P001 | Maize | plastid | 10.2 | 12.58 |
Protein Annotations
| EnsemblPlants:Zm00001d035551_P007 | EnsemblPlants:Zm00001d035551_T007 | EnsemblPlantsGene:Zm00001d035551 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0008270 | InterPro:IPR000504 | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR23147 |
| PANTHER:PTHR23147:SF25 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:AQK79214.1 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000844BE37 | UniProt:A0A1D6LH50 | MapMan:35.2 | : | : |
Description
Serine/arginine-rich splicing factor RS2Z32
Coordinates
chr6:-:32902349..32905929
Molecular Weight (calculated)
42973.2 Da
IEP (calculated)
10.510
GRAVY (calculated)
-0.844
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQLRVWADG LKRPSQHQAS SELDSESEQP YLFPTPLLAH PLTKSFSSAP PQPGAPLDRD PGDMPRYDDR HGNTRLYVGR LAPRTRSRDL EYLFSKYGRI
101: REVELKRDYA FIVCSTTLRL SPTIPPPNPS IWGAEADTLL RGSPSVLRWS GLGLLVLWKL KKTFILHVTF FILSDVLIAK QEFSDPRDAD DAQYNLDGRE
201: VDGSRIIVEF AKGVSVIKAI HGLHPHVVDV AAAGATAEAG AIACVNNPPI TLSRSRSPSG SPRGGRRERD ERRSRSLSYS RSASPRRSVS PAKEKERSRT
301: PNGSRSPRSP SPRAEVSPPL KDNGARNGSD HEGNPGGGEN SKRSRSPSDG YRSPVANGRS PSPRDDRSPS PKGNNEDDER RGSPRGSQSP LN
101: REVELKRDYA FIVCSTTLRL SPTIPPPNPS IWGAEADTLL RGSPSVLRWS GLGLLVLWKL KKTFILHVTF FILSDVLIAK QEFSDPRDAD DAQYNLDGRE
201: VDGSRIIVEF AKGVSVIKAI HGLHPHVVDV AAAGATAEAG AIACVNNPPI TLSRSRSPSG SPRGGRRERD ERRSRSLSYS RSASPRRSVS PAKEKERSRT
301: PNGSRSPRSP SPRAEVSPPL KDNGARNGSD HEGNPGGGEN SKRSRSPSDG YRSPVANGRS PSPRDDRSPS PKGNNEDDER RGSPRGSQSP LN
001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FSDPRDADDA RYYLDGRDFD GSRITVEASR GAPRGSRDNG SRGPPPGSGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP SPKKARQGGS YSRSPVKSRS PRRRRSPSRS RSYSRGRSYS RSRSPVRREK SVEDRSRSPK
201: AMERSVSPKG RDQSLSPDRK VIDASPKRGS DYDGSPKENG NGRNSASPIV GGGESPVGLN GQDRSPIDDE AELSRPSPKG SESP
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP SPKKARQGGS YSRSPVKSRS PRRRRSPSRS RSYSRGRSYS RSRSPVRREK SVEDRSRSPK
201: AMERSVSPKG RDQSLSPDRK VIDASPKRGS DYDGSPKENG NGRNSASPIV GGGESPVGLN GQDRSPIDDE AELSRPSPKG SESP
Arabidopsis Description
RS2Z32RSZ32 [Source:UniProtKB/TrEMBL;Acc:A0A178V7M8]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.