Factsheet for GSMUA_Achr6P15450_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P09660_001
GSMUA_Achr1P17340_001
GSMUA_Achr4P09230_001
GSMUA_Achr4P13560_001
GSMUA_Achr5P27460_001
GSMUA_Achr5P27470_001
GSMUA_Achr7P00820_001
GSMUA_Achr7P08090_001
GSMUA_Achr8P00210_001
GSMUA_Achr8P00220_001
GSMUA_Achr8P09080_001
GSMUA_Achr8P10150_001
GSMUA_Achr8P24800_001
GSMUA_Achr8P34280_001
GSMUA_Achr9P21660_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37340.1	GSMUA_Achr11P...	AT1G02840.1	18674533
AT2G37340.1	GSMUA_Achr8P10150_001	AT1G02840.1	18674533
AT2G37340.1	GSMUA_Achr1P09660_001	AT1G23860.1	18674533
AT2G37340.1	GSMUA_AchrUn_...	AT1G23860.1	18674533
AT2G37340.1	GSMUA_Achr10P...	AT1G53720.1	16497658
AT2G37340.1	GSMUA_Achr8P09080_001	AT2G43370.1	15987817
AT2G37340.1	GSMUA_Achr4P13560_001	AT3G13570.1	18674533
AT2G37340.1	GSMUA_Achr9P21660_001	AT3G13570.1	18674533
AT2G37340.1	GSMUA_Achr10P...	AT3G50670.1	18674533
AT2G37340.1	GSMUA_Achr7P00820_001	AT3G50670.1	18674533
AT2G37340.1	GSMUA_Achr7P08090_001	AT3G50670.1	18674533
AT2G37340.1	GSMUA_Achr1P17340_001	AT3G55460.1	18674533
AT2G37340.1	GSMUA_Achr8P34280_001	AT3G55460.1	18674533
AT2G37340.1	GSMUA_Achr1P17340_001	AT3G55460.1	21798944
AT2G37340.1	GSMUA_Achr8P34280_001	AT3G55460.1	21798944
AT2G37340.1	GSMUA_Achr4P09230_001	AT4G31580.1	18674533
AT2G37340.1	GSMUA_Achr8P24800_001	AT4G31580.1	18674533
AT2G37340.1	GSMUA_Achr5P27460_001	AT5G18810.1	18674533
AT2G37340.1	GSMUA_Achr5P27470_001	AT5G18810.1	18674533
AT2G37340.1	GSMUA_Achr8P00210_001	AT5G18810.1	18674533
AT2G37340.1	GSMUA_Achr8P00220_001	AT5G18810.1	18674533
AT2G37340.1	GSMUA_Achr10P...	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	45.7	89.02
GSMUA_Achr5P29210_001	Banana	nucleus	66.47	73.68
GSMUA_Achr10P...	Banana	nucleus	67.66	70.15
KRG95876	Soybean	nucleus	58.16	68.29
KRH67593	Soybean	endoplasmic reticulum	58.16	68.29
KXG21152	Sorghum	nucleus	63.2	68.27
VIT_08s0040g02860.t01	Wine grape	nucleus	53.71	68.05
EES00292	Sorghum	nucleus	59.35	67.57
PGSC0003DMT400060435	Potato	nucleus	59.64	67.0
Os05t0120100-01	Rice	mitochondrion, nucleus	62.91	65.63
KRH67596	Soybean	nucleus	57.57	64.88
KRG95883	Soybean	nucleus	56.68	64.31
CDX79732	Canola	nucleus	55.19	63.48
CDX80835	Canola	nucleus	49.85	63.4
Os03t0285900-01	Rice	nucleus	62.02	63.33
CDX78183	Canola	nucleus	52.82	62.9
AT3G53500.2	Thale cress	mitochondrion, nucleus	52.82	62.68
CDX73550	Canola	nucleus	52.82	62.68
CDY11223	Canola	nucleus	48.66	62.36
Os01t0155600-01	Rice	nucleus	59.94	62.35
EES18924	Sorghum	nucleus	62.91	62.17
AT2G37340.1	Thale cress	nucleus	53.41	62.07
Solyc09g005980.2.1	Tomato	nucleus	57.57	61.59
Bra005756.1-P	Field mustard	nucleus	41.84	61.3
Zm00001d011004_P008	Maize	nucleus	61.42	61.24
PGSC0003DMT400061471	Potato	nucleus	56.97	60.95
Zm00001d011005_P005	Maize	nucleus	63.8	60.91
TraesCS1A01G108000.2	Wheat	nucleus	50.15	60.79
CDY07586	Canola	mitochondrion, nucleus	51.93	60.76
TraesCS1D01G111000.2	Wheat	nucleus	51.34	60.28
Solyc05g054920.2.1	Tomato	nucleus	60.24	60.24
Bra003139.1-P	Field mustard	mitochondrion, nucleus	51.93	60.14
CDY52755	Canola	mitochondrion, nucleus	51.93	60.14
Bra007004.1-P	Field mustard	nucleus	52.82	59.93
TraesCS1B01G130200.3	Wheat	nucleus	51.04	59.93
TraesCS1D01G051900.1	Wheat	nucleus	60.24	59.36
TraesCS3D01G134500.1	Wheat	nucleus	56.97	59.26
TraesCS1B01G065900.2	Wheat	nucleus	59.94	59.24
Bra023114.1-P	Field mustard	nucleus	55.49	59.18
TraesCS3B01G151100.1	Wheat	nucleus	56.68	59.13
TraesCS1A01G049700.1	Wheat	nucleus	59.94	59.06
CDY46773	Canola	nucleus	55.19	58.86
HORVU1Hr1G024060.21	Barley	nucleus	51.63	58.19
TraesCS3A01G308000.1	Wheat	nucleus	56.68	57.36
KXG21387	Sorghum	nucleus	44.21	56.23
HORVU1Hr1G009950.7	Barley	nucleus, plastid	60.24	55.16
Zm00001d035552_P001	Maize	endoplasmic reticulum, extracellular, golgi	60.53	54.99
Zm00001d037543_P001	Maize	nucleus	27.89	52.22
KRH42195	Soybean	endoplasmic reticulum	41.25	50.55
OQU77498	Sorghum	nucleus	16.32	49.55
KRH58317	Soybean	nucleus	30.56	47.03
Os05t0162600-01	Rice	nucleus	45.1	44.97
Zm00001d035551_P007	Maize	nucleus	40.36	34.69
GSMUA_Achr1P06160_001	Banana	nucleus	24.93	33.73
GSMUA_Achr11P...	Banana	nucleus	31.16	30.35
KXG21391	Sorghum	nucleus	35.91	30.25
GSMUA_Achr8P10150_001	Banana	nucleus	27.89	26.86

Protein Annotations

MapMan:16.4.6.5	Gene3D:3.30.70.330	Gene3D:4.10.60.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0008270	EnsemblPlantsGene:GSMUA_Achr6G15450_001	EnsemblPlants:GSMUA_Achr6P15450_001	EnsemblPlants:GSMUA_Achr6T15450_001	InterPro:IPR000504
InterPro:IPR001878	InterPro:IPR012677	UniProt:M0T793	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098
PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF39	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI000296402A	InterPro:Znf_CCHC
InterPro:Znf_CCHC_sf	SEG:seg	:	:	:	:

Description

splicing factor, arginine/serine-rich 7, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G15450_001]

Coordinates

chr6:-:10297154..10306443

Molecular Weight (calculated)

38525.3 Da

IEP (calculated)

11.279

GRAVY (calculated)

-1.518

Length

337 amino acids

Sequence
(BLAST)

001: MPRYDDRYGS TRLYVGRISY RTRARDLEDL FSRYGRVRNV DLKHDFAFVE FSDSRDADDA RYSLDGREFD GSRIIVEFAR GGPRGSGGSR EYLGRGPPPG
101: SGRCFNCGID GHWARDCKAG DWKNKCYRCG ERGHIERNCQ NSPKKLRRGR SYSRSTSPRR GRSRSRSQSY SRSRSYSRSR SPVRDGRGRD REVRRSRSPE
201: YSRSPRKSPR RSPPPSEDRK RSPSPDGSRS PRDRMSPPPK EEAEQLRSDH GQSPPRENSK SPMSQERESP RNGRYRSPAA NGGSPSPNSN PSPRDYEEDN
301: NRHASPRGSD LSSLSVNFNV PSINRILPSA RCQRKFL

Best Arabidopsis Sequence Match ( AT2G37340.1 )
(BLAST)

001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP

Arabidopsis Description

RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.