Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | nucleus | 54.61 | 95.95 |
| GSMUA_Achr10P... | Banana | nucleus | 72.04 | 67.38 |
| VIT_13s0067g03600.t01 | Wine grape | nucleus | 73.68 | 66.67 |
| GSMUA_Achr6P15450_001 | Banana | nucleus | 73.68 | 66.47 |
| GSMUA_Achr1P06160_001 | Banana | nucleus | 24.67 | 30.12 |
| GSMUA_Achr11P... | Banana | nucleus | 32.24 | 28.32 |
| GSMUA_Achr8P10150_001 | Banana | nucleus | 30.26 | 26.29 |
Protein Annotations
| MapMan:16.4.6.5 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0008270 | EnsemblPlantsGene:GSMUA_Achr5G29210_001 | EnsemblPlants:GSMUA_Achr5P29210_001 | EnsemblPlants:GSMUA_Achr5T29210_001 | InterPro:IPR000504 |
| InterPro:IPR001878 | InterPro:IPR012677 | UniProt:M0T2P5 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00098 |
| PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF39 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | UniParc:UPI0002956A37 | InterPro:Znf_CCHC |
| InterPro:Znf_CCHC_sf | SEG:seg | : | : | : | : |
Description
Putative uncharacterized protein Sb03g005500 [Source:GMGC_GENE;Acc:GSMUA_Achr5G29210_001]
Coordinates
chr5:-:29044736..29047486
Molecular Weight (calculated)
34523.2 Da
IEP (calculated)
10.562
GRAVY (calculated)
-1.670
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRYDDRYGG TRLYVGHLSS RTRSRDLEDL FSRYGRVRDV DMKHDYAFVE FSDPRDADDA RYSLNGREFD GSRIIVEFAK GVPRGSGGSR EYPGRGPPPG
101: SGRCFNCGID GHWARDCKAG DWKNKCYRCG ERGHIERNCH NSPKNLKPGR SYSRSPSPRR GRSRSYSRSR SYSRSRSPAP RRDGRNRDRG DRRSRSPGYD
201: RSPRSRSPPP SKGRKHSLSP DGSKSPRGSR SPSPEERRDV EHNGSDYNRS PVRENSRSTM SQDRENSPVG DRYRSPEPNG RSPSPKDDGD DDHHASPSGR
301: ESQD
101: SGRCFNCGID GHWARDCKAG DWKNKCYRCG ERGHIERNCH NSPKNLKPGR SYSRSPSPRR GRSRSYSRSR SYSRSRSPAP RRDGRNRDRG DRRSRSPGYD
201: RSPRSRSPPP SKGRKHSLSP DGSKSPRGSR SPSPEERRDV EHNGSDYNRS PVRENSRSTM SQDRENSPVG DRYRSPEPNG RSPSPKDDGD DDHHASPSGR
301: ESQD
001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FSDPRDADDA RYYLDGRDFD GSRITVEASR GAPRGSRDNG SRGPPPGSGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP SPKKARQGGS YSRSPVKSRS PRRRRSPSRS RSYSRGRSYS RSRSPVRREK SVEDRSRSPK
201: AMERSVSPKG RDQSLSPDRK VIDASPKRGS DYDGSPKENG NGRNSASPIV GGGESPVGLN GQDRSPIDDE AELSRPSPKG SESP
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP SPKKARQGGS YSRSPVKSRS PRRRRSPSRS RSYSRGRSYS RSRSPVRREK SVEDRSRSPK
201: AMERSVSPKG RDQSLSPDRK VIDASPKRGS DYDGSPKENG NGRNSASPIV GGGESPVGLN GQDRSPIDDE AELSRPSPKG SESP
Arabidopsis Description
RS2Z32RSZ32 [Source:UniProtKB/TrEMBL;Acc:A0A178V7M8]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.