Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG32406 | Sorghum | cytosol | 58.57 | 79.15 |
| TraesCS3D01G260200.1 | Wheat | cytosol | 55.43 | 76.08 |
| TraesCS3B01G293100.1 | Wheat | cytosol | 55.14 | 75.69 |
| TraesCS3A01G260000.1 | Wheat | cytosol | 55.14 | 75.69 |
| Bra018581.1-P | Field mustard | cytosol | 49.71 | 75.0 |
| GSMUA_Achr11P... | Banana | nucleus | 72.29 | 73.12 |
| CDY66028 | Canola | cytosol | 52.57 | 72.73 |
| VIT_14s0060g02290.t01 | Wine grape | nucleus | 58.86 | 71.53 |
| PGSC0003DMT400029666 | Potato | nucleus | 64.29 | 71.43 |
| Solyc01g099810.2.1 | Tomato | nucleus | 53.14 | 70.45 |
| VIT_07s0005g00320.t01 | Wine grape | nucleus | 61.43 | 69.81 |
| Zm00001d040672_P013 | Maize | nucleus | 58.29 | 69.62 |
| GSMUA_Achr1P06160_001 | Banana | nucleus | 49.43 | 69.48 |
| Solyc09g075090.1.1 | Tomato | nucleus | 60.29 | 69.18 |
| KRG96443 | Soybean | nucleus | 61.71 | 69.01 |
| CDX97264 | Canola | nucleus | 59.14 | 67.87 |
| CDX91319 | Canola | nucleus | 57.71 | 67.56 |
| AT1G09140.1 | Thale cress | cytosol | 51.71 | 67.54 |
| KRG92904 | Soybean | nucleus | 52.86 | 67.03 |
| CDY22050 | Canola | nucleus | 59.14 | 66.99 |
| Bra036267.1-P | Field mustard | nucleus | 59.71 | 66.99 |
| CDY50385 | Canola | nucleus | 58.86 | 66.88 |
| Bra018550.1-P | Field mustard | nucleus | 49.14 | 65.9 |
| PGSC0003DMT400037966 | Potato | cytosol, extracellular, nucleus | 54.86 | 65.75 |
| KRH68188 | Soybean | nucleus | 55.71 | 65.22 |
| AT1G02840.1 | Thale cress | nucleus | 56.29 | 65.02 |
| AT4G02430.4 | Thale cress | nucleus | 53.14 | 63.7 |
| HORVU3Hr1G064550.7 | Barley | nucleus, peroxisome | 55.71 | 58.04 |
| CDX95008 | Canola | nucleus | 50.29 | 55.52 |
| Solyc06g009060.2.1 | Tomato | nucleus | 38.86 | 51.91 |
| PGSC0003DMT400063701 | Potato | nucleus | 47.71 | 50.61 |
| GSMUA_Achr11P... | Banana | nucleus | 18.86 | 38.15 |
| Os01t0316600-01 | Rice | plastid | 13.14 | 37.1 |
| GSMUA_Achr10P... | Banana | nucleus | 28.57 | 30.77 |
| GSMUA_Achr5P29210_001 | Banana | nucleus | 26.29 | 30.26 |
| GSMUA_Achr6P15450_001 | Banana | nucleus | 26.86 | 27.89 |
Protein Annotations
| MapMan:16.4.6.1 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| EnsemblPlantsGene:GSMUA_Achr8G10150_001 | EnsemblPlants:GSMUA_Achr8P10150_001 | EnsemblPlants:GSMUA_Achr8T10150_001 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M0TP68 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43933 | PANTHER:PTHR43933:SF6 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000295EFD7 | SEG:seg | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G10150_001]
Coordinates
chr8:-:7244489..7253671
Molecular Weight (calculated)
39859.7 Da
IEP (calculated)
11.712
GRAVY (calculated)
-1.118
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MNRWDIRPES RSVVFPDYKI PLYALIAIRP KAPKPRRRFA KPSRLSPRPG SMSKRYSRTI YVGNLPGDIR EREVEDLFYK YGPIIDIDLK IPPRPPGYAF
101: IEFEDPRDAE DAIRGRDGYN FDGHRLRVEL AHGGRGQSSS FDRHSSHSSG GRRGGVSRRT EYRVMVTGLP SSASWQDLKD HMRRAGDVCF SEVFRDGGGT
201: IGIVDYTNYD DMKYAIRKLD DSEFRNAFSR AYIRVKEYDS KRSLSRSRSR SRSNSRSPSP ARSRSRSRSK SPKEKSSRHS LSRSRSRSAS SRSRSASKGR
301: SLSRSRSRSR SPVTSPARDE PVNQSPTKRS PSKSRSRSLS RSRSPVAKSD
101: IEFEDPRDAE DAIRGRDGYN FDGHRLRVEL AHGGRGQSSS FDRHSSHSSG GRRGGVSRRT EYRVMVTGLP SSASWQDLKD HMRRAGDVCF SEVFRDGGGT
201: IGIVDYTNYD DMKYAIRKLD DSEFRNAFSR AYIRVKEYDS KRSLSRSRSR SRSNSRSPSP ARSRSRSRSK SPKEKSSRHS LSRSRSRSAS SRSRSASKGR
301: SLSRSRSRSR SPVTSPARDE PVNQSPTKRS PSKSRSRSLS RSRSPVAKSD
001: MSSRWNRTIY VGNLPGDIRK CEVEDLFYKY GPIVDIDLKI PPRPPGYAFV EFEDPRDADD AIYGRDGYDF DGCRLRVEIA HGGRRFSPSV DRYSSSYSAS
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRSQSRS KSRSRSRSNS PVSPVISG
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRSQSRS KSRSRSRSNS PVSPVISG
Arabidopsis Description
SR30Serine/arginine-rich splicing factor SR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFR5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.