Factsheet for GSMUA_Achr1P06160_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94214	Canola	cytosol	59.04	73.5
VIT_16s0098g01020.t01	Wine grape	nucleus	71.49	71.2
CDX86974	Canola	nucleus	74.3	68.77
CDY00202	Canola	nucleus	74.7	67.64
Bra019595.1-P	Field mustard	nucleus	75.5	65.96
KRH53616	Soybean	nucleus	69.48	65.78
KRH64312	Soybean	nucleus	70.28	65.54
CDX68538	Canola	nucleus	73.09	64.54
Bra029955.1-P	Field mustard	nucleus	66.67	63.85
Bra017986.1-P	Field mustard	nucleus	72.29	63.38
CDY08133	Canola	cytosol	72.29	62.28
CDY05936	Canola	nucleus	73.49	62.03
Solyc03g082380.2.1	Tomato	nucleus	68.67	61.07
AT3G49430.4	Thale cress	nucleus	72.69	60.33
GSMUA_Achr11P...	Banana	nucleus	71.08	51.16
PGSC0003DMT400008347	Potato	cytosol	64.26	49.84
GSMUA_Achr8P10150_001	Banana	nucleus	69.48	49.43
GSMUA_Achr11P...	Banana	nucleus	22.09	31.79
CDY61855	Canola	nucleus	73.09	30.8
GSMUA_Achr6P15450_001	Banana	nucleus	33.73	24.93
GSMUA_Achr5P29210_001	Banana	nucleus	30.12	24.67
GSMUA_Achr10P...	Banana	nucleus	31.73	24.31

Protein Annotations

MapMan:16.4.6.1	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0005829	EnsemblPlantsGene:GSMUA_Achr1G06160_001	EnsemblPlants:GSMUA_Achr1P06160_001	EnsemblPlants:GSMUA_Achr1T06160_001	InterPro:IPR000504
InterPro:IPR012677	UniProt:M0RXH4	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43933
PANTHER:PTHR43933:SF5	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000294EF0D
SEG:seg	:	:	:	:	:

Description

Pre-mRNA-splicing factor SF2 [Source:GMGC_GENE;Acc:GSMUA_Achr1G06160_001]

Coordinates

chr1:-:4955541..4961758

Molecular Weight (calculated)

28167.1 Da

IEP (calculated)

11.086

GRAVY (calculated)

-0.916

Length

249 amino acids

Sequence
(BLAST)

001: MSARLSRTIY VGNLPIDIRE SEVEDLFYKY GHVVEIQLKN PPRPPGYCFV EFESSRDAED AVRGRDGYNF DGHRLRVELA HGGRGQSVSV GRGGRHGSGG
101: SKFGVSHRSE FRVIVKGLPS SASWQDLKDH MRKAGDVCFA QVFRDGDGAM GLVDYTNYED MKYAIRKLDD TEFRNPFSRS YIRVKSYERS MSKSRSQSRS
201: RSRSRGPRRS RSKSIERPLS RSVSKSASPR PRSVSPARMS RSRSRSKSG

Best Arabidopsis Sequence Match ( AT3G49430.6 )
(BLAST)

001: MSGRFSRSIY VGNLPGDIRE HEIEDIFYKY GRIVDIELKV PPRPPCYCFV EFEHSRDAED AIKGRDGYNL DGCRLRVELA HGGRGQSSSD RRGGYGGGGS
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV

Arabidopsis Description

SR34ASerine/arginine-rich splicing factor SR34A [Source:UniProtKB/Swiss-Prot;Acc:A2RVS6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.