Factsheet for Bra019595.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00202	Canola	nucleus	96.49	100.0
CDX86974	Canola	nucleus	93.68	99.26
Bra017986.1-P	Field mustard	nucleus	93.33	93.66
CDX94214	Canola	cytosol	65.61	93.5
AT3G49430.4	Thale cress	nucleus	92.28	87.67
Bra029955.1-P	Field mustard	nucleus	77.54	85.0
KRH64312	Soybean	nucleus	75.09	80.15
VIT_16s0098g01020.t01	Wine grape	nucleus	69.12	78.8
KRH53616	Soybean	nucleus	72.28	78.33
GSMUA_Achr1P06160_001	Banana	nucleus	65.96	75.5
Solyc03g082380.2.1	Tomato	nucleus	70.88	72.14
Bra018581.1-P	Field mustard	cytosol	53.68	65.95
Bra018550.1-P	Field mustard	nucleus	53.68	58.62
Bra036267.1-P	Field mustard	nucleus	62.81	57.37
PGSC0003DMT400008347	Potato	cytosol	63.86	56.7
Bra029777.1-P	Field mustard	nucleus	30.53	30.31
Bra023114.1-P	Field mustard	nucleus	30.18	27.22
Bra007004.1-P	Field mustard	nucleus	27.72	26.6
Bra005756.1-P	Field mustard	nucleus	21.4	26.52
Bra003139.1-P	Field mustard	mitochondrion, nucleus	27.02	26.46

Protein Annotations

EnsemblPlants:Bra019595.1	EnsemblPlants:Bra019595.1-P	EnsemblPlantsGene:Bra019595	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR43933	PANTHER:PTHR43933:SF5	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000253EF77	UniProt:M4DSV2	MapMan:16.4.6.1	:

Description

AT3G49430 (E=1e-086) SRp34a | SRp34a (Ser/Arg-rich protein 34a); RNA binding / nucleic acid binding / nucleotide binding

Coordinates

chrA06:-:11877810..11879531

Molecular Weight (calculated)

32150.6 Da

IEP (calculated)

11.048

GRAVY (calculated)

-1.089

Length

285 amino acids

Sequence
(BLAST)

001: MSGRFSRSIY VGNLPGDIRE SEIEDLFYKY GRIVDIELKV PPRPPCYCFV EFEHARDAED AVDGRDGYNF DGCRLRVELA HGGRGQSSGD RRGGYRGGGG
101: YGGGGGSARF GVSRHSEFRV IVRGLPSSAS WQDLKDHMRK AGDVCFAEVT RDSDGTYGLV DYTNYDDMKY AIRKLDDTEF RNPWARGYIR VKKYESSQSR
201: SPSRSRSRSR SRGRGRSPSR SISRSRSPRK DLSKSPRRSL SRSISKSRSP SPDRKKSPPR AMSKSRSRSR SRSRSLSKSP AKVYK

Best Arabidopsis Sequence Match ( AT3G49430.6 )
(BLAST)

001: MSGRFSRSIY VGNLPGDIRE HEIEDIFYKY GRIVDIELKV PPRPPCYCFV EFEHSRDAED AIKGRDGYNL DGCRLRVELA HGGRGQSSSD RRGGYGGGGS
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV

Arabidopsis Description

SR34ASerine/arginine-rich splicing factor SR34A [Source:UniProtKB/Swiss-Prot;Acc:A2RVS6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.