Factsheet for Solyc01g099810.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005820.2.1
Solyc01g080660.2.1
Solyc03g071560.2.1
Solyc07g066420.2.1
Solyc09g030390.2.1
Solyc11g008210.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09140.1	Solyc07g066420.2.1	AT1G53720.1	16497658
AT1G09140.1	Solyc09g030390.2.1	AT2G29210.1	21798944
AT1G09140.1	Solyc01g005820.2.1	AT3G13570.1	18674533
AT1G09140.1	Solyc03g071560.2.1	AT5G04280.1	21798944
AT1G09140.1	Solyc11g008210.1.1	AT5G04280.1	21798944
AT1G09140.1	Solyc01g080660.2.1	AT5G18810.1	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018581.1-P	Field mustard	cytosol	62.5	71.12
CDY66028	Canola	cytosol	64.77	67.59
KXG32406	Sorghum	cytosol	65.53	66.8
VIT_14s0060g02290.t01	Wine grape	nucleus	72.35	66.32
KRG92904	Soybean	nucleus	68.18	65.22
TraesCS1A01G229900.1	Wheat	cytosol, mitochondrion, nucleus	61.74	64.43
TraesCS3A01G260000.1	Wheat	cytosol	62.12	64.31
TraesCS1D01G232100.2	Wheat	cytosol, mitochondrion, nucleus	61.74	64.17
TraesCS3D01G260200.1	Wheat	cytosol	61.74	63.92
TraesCS3B01G293100.1	Wheat	cytosol	61.74	63.92
AT1G09140.1	Thale cress	cytosol	64.02	63.06
KXG21829	Sorghum	nucleus	65.53	62.23
TraesCS1B01G244200.1	Wheat	cytosol, mitochondrion, nucleus	63.26	62.08
EER94870	Sorghum	mitochondrion, nucleus	66.29	61.19
Zm00001d047498_P003	Maize	nucleus	65.91	61.05
TraesCS2D01G112200.1	Wheat	nucleus	64.39	59.86
HORVU2Hr1G019410.4	Barley	mitochondrion, nucleus	64.77	59.79
Zm00001d040672_P013	Maize	nucleus	66.29	59.73
TraesCS2A01G111600.2	Wheat	mitochondrion, nucleus	64.02	59.51
Os03t0344100-02	Rice	mitochondrion, nucleus	64.39	59.44
Zm00001d041673_P001	Maize	cytosol	25.38	58.77
Os07t0673500-01	Rice	nucleus	65.15	58.11
TraesCS4D01G168700.1	Wheat	mitochondrion, nucleus	64.39	58.02
TraesCS4B01G157000.1	Wheat	mitochondrion, nucleus	64.39	58.02
Solyc09g075090.1.1	Tomato	nucleus	66.67	57.7
PGSC0003DMT400063701	Potato	nucleus	71.97	57.58
TraesCS4A01G157700.1	Wheat	mitochondrion	63.64	56.76
HORVU4Hr1G046940.7	Barley	mitochondrion, nucleus	62.88	56.27
Os05t0364600-01	Rice	nucleus	67.42	55.8
GSMUA_Achr11P...	Banana	nucleus	71.21	54.34
Solyc03g082380.2.1	Tomato	nucleus	56.82	53.57
GSMUA_Achr8P10150_001	Banana	nucleus	70.45	53.14
CDX95008	Canola	nucleus	63.64	53.0
TraesCS2B01G130400.1	Wheat	nucleus	64.39	49.13
HORVU3Hr1G064550.7	Barley	nucleus, peroxisome	62.5	49.11
Zm00001d037925_P006	Maize	cytosol, nucleus, plastid	62.88	47.98
Solyc06g009060.2.1	Tomato	nucleus	35.98	36.26
Os01t0316600-01	Rice	plastid	16.67	35.48
Zm00001d009821_P001	Maize	plastid	31.82	26.42
Solyc09g005980.2.1	Tomato	nucleus	30.68	25.71
Solyc05g054920.2.1	Tomato	nucleus	31.82	24.93

Protein Annotations

EnsemblPlants:Solyc01g099810.2.1	EnsemblPlantsGene:Solyc01g099810.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR43933	PANTHER:PTHR43933:SF1	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002768F6F	UniProt:K4B115	MapMan:16.4.6.1	:	:

Description

Serine/arginine-rich splicing factor SR30 [Source:Projected from Arabidopsis thaliana (AT1G09140) UniProtKB/Swiss-Prot;Acc:Q9XFR5]

Coordinates

chr1:-:89948817..89955969

Molecular Weight (calculated)

30152.0 Da

IEP (calculated)

10.246

GRAVY (calculated)

-0.886

Length

264 amino acids

Sequence
(BLAST)

001: MSYSNMGRLS RTIYVGNLPG DIREREVEDL FYKYGPIVEI DLKVPPRPPG YAFVEFEDPR DADDAIRGRD GYDFDGHRLR VELAHGGRGS SSYDRHSSYS
101: SASRSGLSRR SDYRVLVSGL PSSASWQDLK DHMRRAGDVC FSQVFRDRDG MRGIVDYTNY DDMRYAIKKL DDSLFRNQFS RAYIRVDKYD KRHSYSRSPS
201: PYNSRSRSYS RSRSPRRSYS SQSGSVSPRG KYSRRSVSIS PSRAFSPALS LSRSGFRGDL GIAI

Best Arabidopsis Sequence Match ( AT1G09140.1 )
(BLAST)

001: MSSRWNRTIY VGNLPGDIRK CEVEDLFYKY GPIVDIDLKI PPRPPGYAFV EFEDPRDADD AIYGRDGYDF DGCRLRVEIA HGGRRFSPSV DRYSSSYSAS
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRSQSRS KSRSRSRSNS PVSPVISG

Arabidopsis Description

SR30Serine/arginine-rich splicing factor SR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFR5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.