CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88795
EER91800
EER92211
EER95096
EER97037
EER97602
EES00292
EES10309
EES15089
EES16196
EES18924
KXG21152
KXG21387
KXG21391
KXG36736
KXG37841
KXG39239
KXG39307
KXG39705
OQU77498
OQU88590

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02840.1	EER88795	AT1G53720.1	16497658
AT1G02840.1	EES00292	AT2G37340.1	18674533
AT1G02840.1	EES18924	AT2G37340.1	18674533
AT1G02840.1	KXG21152	AT2G37340.1	18674533
AT1G02840.1	KXG21387	AT2G37340.1	18674533
AT1G02840.1	KXG21391	AT2G37340.1	18674533
AT1G02840.1	OQU77498	AT2G37340.1	18674533
AT1G02840.1	EER97037	AT2G43370.1	15987817
AT1G02840.1	EER92211	AT3G13570.1	18674533
AT1G02840.1	EER97602	AT3G13570.1	18674533
AT1G02840.1	EER91800	AT3G50670.1	18674533
AT1G02840.1	EER95096	AT3G50670.1	18674533
AT1G02840.1	EES10309	AT3G55460.1	18674533
AT1G02840.1	EES16196	AT3G55460.1	18674533
AT1G02840.1	KXG39307	AT5G18810.1	18674533
AT1G02840.1	KXG36736	AT5G64200.2	18674533
AT1G02840.1	KXG39239	AT5G64200.2	18674533
AT1G02840.1	EES15089	AT5G64960.1	18208522
AT1G09140.1	EER88795	AT1G53720.1	16497658
AT1G09140.1	KXG39705	AT2G29210.1	21798944
AT1G09140.1	EER92211	AT3G13570.1	18674533
AT1G09140.1	EER97602	AT3G13570.1	18674533
AT1G09140.1	EES10309	AT3G55460.1	18674533
AT1G09140.1	EES16196	AT3G55460.1	18674533
AT1G09140.1	KXG37841	AT5G04280.1	21798944
AT1G09140.1	OQU88590	AT5G04280.1	21798944
AT1G09140.1	KXG39307	AT5G18810.1	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047498_P003	Maize	nucleus	96.5	96.84
Os03t0344100-02	Rice	mitochondrion, nucleus	90.21	90.21
TraesCS4D01G168700.1	Wheat	mitochondrion, nucleus	88.81	86.69
TraesCS4B01G157000.1	Wheat	mitochondrion, nucleus	87.76	85.67
TraesCS4A01G157700.1	Wheat	mitochondrion	87.76	84.8
HORVU4Hr1G046940.7	Barley	mitochondrion, nucleus	85.66	83.05
KXG32406	Sorghum	cytosol	67.13	74.13
Bra018581.1-P	Field mustard	cytosol	56.29	69.4
KXG21829	Sorghum	nucleus	66.78	68.7
CDY66028	Canola	cytosol	59.44	67.19
VIT_14s0060g02290.t01	Wine grape	nucleus	67.13	66.67
Solyc01g099810.2.1	Tomato	nucleus	61.19	66.29
CDX91319	Canola	nucleus	68.88	65.89
KRG92904	Soybean	nucleus	62.59	64.86
PGSC0003DMT400029666	Potato	nucleus	71.33	64.76
AT1G02840.1	Thale cress	nucleus	67.83	64.03
CDX97264	Canola	nucleus	68.18	63.93
Bra018550.1-P	Field mustard	nucleus	58.04	63.6
CDY22050	Canola	nucleus	68.53	63.43
AT1G09140.1	Thale cress	cytosol	59.09	63.06
CDY50385	Canola	nucleus	67.83	62.99
Bra036267.1-P	Field mustard	nucleus	68.53	62.82
KRG96443	Soybean	nucleus	68.53	62.62
Solyc09g075090.1.1	Tomato	nucleus	65.73	61.64
PGSC0003DMT400037966	Potato	cytosol, extracellular, nucleus	62.59	61.3
VIT_07s0005g00320.t01	Wine grape	nucleus	65.73	61.04
KRH68188	Soybean	nucleus	63.64	60.87
AT4G02430.4	Thale cress	nucleus	61.54	60.27
CDX95008	Canola	nucleus	55.24	49.84
PGSC0003DMT400063701	Potato	nucleus	56.64	49.09
Solyc06g009060.2.1	Tomato	nucleus	41.61	45.42
KXG21152	Sorghum	nucleus	32.52	29.81
EES00292	Sorghum	nucleus	30.77	29.73
KXG21387	Sorghum	nucleus	25.87	27.92
OQU77498	Sorghum	nucleus	10.14	26.13
EES18924	Sorghum	nucleus	31.12	26.1
KXG21391	Sorghum	nucleus	23.08	16.5

Protein Annotations

MapMan:16.4.6.1	Gene3D:3.30.70.330	EntrezGene:8082304	UniProt:C5X0N4	EnsemblPlants:EER94870	ProteinID:EER94870
ProteinID:EER94870.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	EMBL:KC425089	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43933
PANTHER:PTHR43933:SF6	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3001G375700	SUPFAM:SSF54928
unigene:Sbi.7537	UniParc:UPI0001A82D75	RefSeq:XP_002467872.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:66406306..66411633

Molecular Weight (calculated)

31659.5 Da

IEP (calculated)

10.753

GRAVY (calculated)

-1.122

Length

286 amino acids

Sequence
(BLAST)

001: MSRRWSRTIY VGNLPGDIRE REVEDLFYKY GRIVDIDLKV PPRPPGYAFV EFEDARDAED AIAGRDGYNF DGHRLRVEAA HGGRGNTSSY DRSSGFGGGG
101: GGARRGVSRH SEYRVLVTGL PSSASWQDLK DHMRKAGDVC FSEVYREGGG TVGIVDYTNY DDMKYAIKKL DDTEFRNAFG RAYIRVKEYD GKRGRSYSRS
201: RSPSRSYSKS RSPSKSPKTR RSSSRSRSRS VSSRSRSASK GRSPSRSPAR SKSPNASPAN GEAASPKKQS PNRSPSGSRS PDAKPE

Best Arabidopsis Sequence Match ( AT3G49430.6 )
(BLAST)

001: MSGRFSRSIY VGNLPGDIRE HEIEDIFYKY GRIVDIELKV PPRPPCYCFV EFEHSRDAED AIKGRDGYNL DGCRLRVELA HGGRGQSSSD RRGGYGGGGS
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV

Arabidopsis Description

SR34ASerine/arginine-rich splicing factor SR34A [Source:UniProtKB/Swiss-Prot;Acc:A2RVS6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.