Factsheet for VIT_07s0005g00320.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g00250.t01
VIT_04s0023g01580.t01
VIT_05s0102g00080.t01
VIT_07s0141g00280.t01
VIT_08s0040g02860.t01
VIT_12s0142g00110.t01
VIT_13s0019g01060.t01
VIT_14s0030g00480.t01
VIT_19s0027g01660.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02840.1	VIT_01s0026g00250.t01	AT1G23860.1	18674533
AT1G02840.1	VIT_19s0027g01660.t01	AT1G53720.1	16497658
AT1G02840.1	VIT_08s0040g02860.t01	AT2G37340.1	18674533
AT1G02840.1	VIT_05s0102g00080.t01	AT2G43370.1	15987817
AT1G02840.1	VIT_04s0023g01580.t01	AT3G50670.1	18674533
AT1G02840.1	VIT_13s0019g01060.t01	AT3G55460.1	18674533
AT1G02840.1	VIT_14s0030g00480.t01	AT5G18810.1	18674533
AT1G02840.1	VIT_12s0142g00110.t01	AT5G64200.2	18674533
AT1G02840.1	VIT_07s0141g00280.t01	AT5G64960.1	18208522

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32406	Sorghum	cytosol	59.42	70.66
Solyc09g075090.1.1	Tomato	nucleus	69.48	70.16
KRH68188	Soybean	nucleus	67.53	69.57
PGSC0003DMT400029666	Potato	nucleus	70.78	69.21
TraesCS3B01G293100.1	Wheat	cytosol	56.82	68.63
TraesCS3D01G260200.1	Wheat	cytosol	56.49	68.24
TraesCS3A01G260000.1	Wheat	cytosol	56.49	68.24
PGSC0003DMT400037966	Potato	cytosol, extracellular, nucleus	64.61	68.15
Bra018550.1-P	Field mustard	nucleus	57.14	67.43
KRG96443	Soybean	nucleus	68.51	67.41
VIT_14s0060g02290.t01	Wine grape	nucleus	62.99	67.36
TraesCS1A01G229900.1	Wheat	cytosol, mitochondrion, nucleus	54.87	66.8
TraesCS2A01G111600.2	Wheat	mitochondrion, nucleus	61.36	66.55
AT4G02430.4	Thale cress	nucleus	62.99	66.44
HORVU2Hr1G019410.4	Barley	mitochondrion, nucleus	61.69	66.43
VIT_16s0098g01020.t01	Wine grape	nucleus	53.9	66.4
Os07t0673500-01	Rice	nucleus	63.64	66.22
TraesCS2D01G112200.1	Wheat	nucleus	61.04	66.2
TraesCS1B01G244200.1	Wheat	cytosol, mitochondrion, nucleus	57.79	66.17
TraesCS1D01G232100.2	Wheat	cytosol, mitochondrion, nucleus	54.55	66.14
Os03t0344100-02	Rice	mitochondrion, nucleus	61.36	66.08
EER94870	Sorghum	mitochondrion, nucleus	61.04	65.73
KXG21829	Sorghum	nucleus	58.44	64.75
Zm00001d047498_P003	Maize	nucleus	59.74	64.56
CDX97264	Canola	nucleus	63.64	64.26
CDX91319	Canola	nucleus	62.34	64.21
TraesCS4B01G157000.1	Wheat	mitochondrion, nucleus	60.06	63.14
CDY22050	Canola	nucleus	63.31	63.11
AT1G02840.1	Thale cress	nucleus	62.01	63.04
CDY50385	Canola	nucleus	62.99	62.99
TraesCS4D01G168700.1	Wheat	mitochondrion, nucleus	59.74	62.8
Zm00001d040672_P013	Maize	nucleus	59.74	62.8
Bra036267.1-P	Field mustard	nucleus	63.31	62.5
TraesCS4A01G157700.1	Wheat	mitochondrion	59.74	62.16
HORVU4Hr1G046940.7	Barley	mitochondrion, nucleus	59.42	62.03
GSMUA_Achr8P10150_001	Banana	nucleus	69.81	61.43
GSMUA_Achr11P...	Banana	nucleus	68.51	60.98
Zm00001d041673_P001	Maize	cytosol	22.08	59.65
Os05t0364600-01	Rice	nucleus	61.36	59.25
TraesCS2B01G130400.1	Wheat	nucleus	61.36	54.62
HORVU3Hr1G064550.7	Barley	nucleus, peroxisome	57.14	52.38
Zm00001d037925_P006	Maize	cytosol, nucleus, plastid	56.17	50.0
Solyc06g009060.2.1	Tomato	nucleus	39.94	46.95
Os01t0316600-01	Rice	plastid	14.29	35.48
VIT_08s0040g02860.t01	Wine grape	nucleus	24.03	27.82
VIT_13s0067g03600.t01	Wine grape	nucleus	30.19	27.68
Zm00001d009821_P001	Maize	plastid	27.92	27.04
VIT_08s0040g02850.t01	Wine grape	cytosol, extracellular, mitochondrion, nucleus	4.87	25.0

Protein Annotations

MapMan:16.4.6.1	Gene3D:3.30.70.330	ProteinID:CCB59957	ProteinID:CCB59957.1	UniProt:F6HZ42	EMBL:FN596502
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43933	PANTHER:PTHR43933:SF7	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGR:TC57241	UniParc:UPI000210A521	ArrayExpress:VIT_07s0005g00320
EnsemblPlantsGene:VIT_07s0005g00320	EnsemblPlants:VIT_07s0005g00320.t01	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:+:3096314..3101197

Molecular Weight (calculated)

34799.3 Da

IEP (calculated)

10.326

GRAVY (calculated)

-0.875

Length

308 amino acids

Sequence
(BLAST)

001: MSSRASRTLY VGNLPGDIRE REVEDLFYKY GPIAHIDLKI PPRPPGYAFV EFEESRDAED AIRGRDGYDF DGHRLRVELA HGGRGHSSSI DRHSHSSGRG
101: GRGGASRRSE YRVLVTGLPS SASWQDLKDH MRRAGDVCFS QVFHDGGGTV GIVDYTNYDD MKFAIRKLDD SEFRNAFSRA YVRVKEYDSS RSFSRSRSRS
201: YSRGKSASRS RSRSYSRSRS QSKSPKAKSS RRSRSRSVSS RSHSGSKPRS LSGDLGLHIR ILMGYDSNAC NSFGCGDWEQ RRSWIAIVKL DYCELSAIGI
301: WESTFNER

Best Arabidopsis Sequence Match ( AT1G02840.2 )
(BLAST)

001: MSSRSSRTVY VGNLPGDIRE REVEDLFSKY GPVVQIDLKV PPRPPGYAFV EFDDARDAED AIHGRDGYDF DGHRLRVELA HGGRRSSDDT RGSFNGGGRG
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRWITV ETLDHLDHNI ISGFL

Arabidopsis Description

SR34Serine/arginine-rich-splicing factor SR34 [Source:UniProtKB/Swiss-Prot;Acc:O22315]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.