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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 1
  • plastid 1
  • cytosol 1
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G02840.1 Zm00001d036620_P001 AT1G53720.1 16497658
AT1G02840.1 Zm00001d011004_P008 AT2G37340.1 18674533
AT1G02840.1 Zm00001d011005_P005 AT2G37340.1 18674533
AT1G02840.1 Zm00001d035551_P007 AT2G37340.1 18674533
AT1G02840.1 Zm00001d035552_P001 AT2G37340.1 18674533
AT1G02840.1 Zm00001d037543_P001 AT2G37340.1 18674533
AT1G02840.1 Zm00001d021137_P002 AT2G43370.1 15987817
AT1G02840.1 Zm00001d004470_P001 AT3G13570.1 18674533
AT1G02840.1 Zm00001d004722_P001 AT3G13570.1 18674533
AT1G02840.1 Zm00001d005285_P001 AT3G13570.1 18674533
AT1G02840.1 Zm00001d005739_P004 AT3G13570.1 18674533
AT1G02840.1 Zm00001d010176_P001 AT3G13570.1 18674533
AT1G02840.1 Zm00001d010881_P001 AT3G13570.1 18674533
AT1G02840.1 Zm00001d012570_P002 AT3G13570.1 18674533
AT1G02840.1 Zm00001d013841_P001 AT3G13570.1 18674533
AT1G02840.1 Zm00001d015189_P001 AT3G13570.1 18674533
AT1G02840.1 Zm00001d016504_P001 AT3G13570.1 18674533
AT1G02840.1 Zm00001d019443_P002 AT3G13570.1 18674533
AT1G02840.1 Zm00001d022243_P002 AT3G13570.1 18674533
AT1G02840.1 Zm00001d029305_P001 AT3G13570.1 18674533
AT1G02840.1 Zm00001d029629_P001 AT3G13570.1 18674533
AT1G02840.1 Zm00001d043759_P001 AT3G13570.1 18674533
AT1G02840.1 Zm00001d047401_P001 AT3G13570.1 18674533
AT1G02840.1 Zm00001d014343_P002 AT3G50670.1 18674533
AT1G02840.1 Zm00001d030739_P002 AT3G55460.1 18674533
AT1G02840.1 Zm00001d048609_P001 AT3G55460.1 18674533
AT1G02840.1 Zm00001d029256_P002 AT5G18810.1 18674533
AT1G02840.1 Zm00001d006906_P010 AT5G64200.2 18674533
AT1G02840.1 Zm00001d022189_P002 AT5G64200.2 18674533
AT1G02840.1 Zm00001d029380_P002 AT5G64200.2 18674533
AT1G02840.1 Zm00001d012392_P001 AT5G64960.1 18208522
AT1G09140.1 Zm00001d036620_P001 AT1G53720.1 16497658
AT1G09140.1 Zm00001d028579_P027 AT2G29210.1 21798944
AT1G09140.1 Zm00001d047831_P001 AT2G29210.1 21798944
AT1G09140.1 Zm00001d004470_P001 AT3G13570.1 18674533
AT1G09140.1 Zm00001d004722_P001 AT3G13570.1 18674533
AT1G09140.1 Zm00001d005285_P001 AT3G13570.1 18674533
AT1G09140.1 Zm00001d005739_P004 AT3G13570.1 18674533
AT1G09140.1 Zm00001d010176_P001 AT3G13570.1 18674533
AT1G09140.1 Zm00001d010881_P001 AT3G13570.1 18674533
AT1G09140.1 Zm00001d012570_P002 AT3G13570.1 18674533
AT1G09140.1 Zm00001d013841_P001 AT3G13570.1 18674533
AT1G09140.1 Zm00001d015189_P001 AT3G13570.1 18674533
AT1G09140.1 Zm00001d016504_P001 AT3G13570.1 18674533
AT1G09140.1 Zm00001d019443_P002 AT3G13570.1 18674533
AT1G09140.1 Zm00001d022243_P002 AT3G13570.1 18674533
AT1G09140.1 Zm00001d029305_P001 AT3G13570.1 18674533
AT1G09140.1 Zm00001d029629_P001 AT3G13570.1 18674533
AT1G09140.1 Zm00001d043759_P001 AT3G13570.1 18674533
AT1G09140.1 Zm00001d047401_P001 AT3G13570.1 18674533
AT1G09140.1 Zm00001d030739_P002 AT3G55460.1 18674533
AT1G09140.1 Zm00001d048609_P001 AT3G55460.1 18674533
AT1G09140.1 Zm00001d007799_P001 AT5G04280.1 21798944
AT1G09140.1 Zm00001d013543_P009 AT5G04280.1 21798944
AT1G09140.1 Zm00001d019041_P001 AT5G04280.1 21798944
AT1G09140.1 Zm00001d033511_P002 AT5G04280.1 21798944
AT1G09140.1 Zm00001d029256_P002 AT5G18810.1 18674533
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KXG21829 Sorghum nucleus 69.36 86.33
TraesCS1A01G229900.1 Wheat cytosol, mitochondrion, nucleus 53.76 73.52
TraesCS1D01G232100.2 Wheat cytosol, mitochondrion, nucleus 53.47 72.83
TraesCS1B01G244200.1 Wheat cytosol, mitochondrion, nucleus 56.07 72.12
Os05t0364600-01 Rice nucleus 63.87 69.28
Zm00001d040672_P013 Maize nucleus 56.07 66.21
Bra018581.1-P Field mustard cytosol 44.22 65.95
Zm00001d041673_P001 Maize cytosol 20.81 63.16
Solyc01g099810.2.1 Tomato nucleus 47.98 62.88
Zm00001d047498_P003 Maize nucleus 51.45 62.46
CDY66028 Canola cytosol 45.38 62.06
KRG92904 Soybean nucleus 48.84 61.23
VIT_14s0060g02290.t01 Wine grape nucleus 50.87 61.11
Bra018550.1-P Field mustard nucleus 43.35 57.47
AT1G09140.1 Thale cress cytosol 44.51 57.46
AT4G02430.4 Thale cress nucleus 47.69 56.51
CDX91319 Canola nucleus 48.55 56.19
VIT_07s0005g00320.t01 Wine grape nucleus 50.0 56.17
KRH68188 Soybean nucleus 48.27 55.85
Solyc09g075090.1.1 Tomato nucleus 48.84 55.41
KRG96443 Soybean nucleus 50.0 55.27
CDX97264 Canola nucleus 48.55 55.08
PGSC0003DMT400037966 Potato cytosol, extracellular, nucleus 46.24 54.79
AT1G02840.1 Thale cress nucleus 47.98 54.79
CDY22050 Canola nucleus 48.84 54.69
PGSC0003DMT400029666 Potato nucleus 49.71 54.6
CDY50385 Canola nucleus 48.55 54.55
Bra036267.1-P Field mustard nucleus 48.84 54.17
CDX95008 Canola nucleus 43.93 47.95
PGSC0003DMT400063701 Potato nucleus 42.49 44.55
Solyc06g009060.2.1 Tomato nucleus 27.17 35.88
Zm00001d009821_P001 Maize plastid 27.17 29.56
Zm00001d037543_P001 Maize nucleus 13.29 25.56
Zm00001d011004_P008 Maize nucleus 24.57 25.15
Zm00001d011005_P005 Maize nucleus 23.99 23.51
Zm00001d035552_P001 Maize endoplasmic reticulum, extracellular, golgi 23.12 21.56
Zm00001d035551_P007 Maize nucleus 19.08 16.84
Protein Annotations
EntrezGene:100285019MapMan:16.4.6.1Gene3D:3.30.70.330UniProt:A0A1D6M1U3ProteinID:AQK85211.1GO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0005488InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076PFscan:PS50102PANTHER:PTHR43933PANTHER:PTHR43933:SF1InterPro:RBD_domain_sfInterPro:RRM_dom
SMART:SM00360SUPFAM:SSF54928UniParc:UPI000842A5AEEnsemblPlantsGene:Zm00001d037925EnsemblPlants:Zm00001d037925_P006EnsemblPlants:Zm00001d037925_T006
SEG:seg:::::
Description
ASF/SF2-like pre-mRNA splicing factor SRP31%3B ASF/SF2-like pre-mRNA splicing factor SRP31'
Coordinates
chr6:-:142153339..142157699
Molecular Weight (calculated)
39344.2 Da
IEP (calculated)
9.654
GRAVY (calculated)
-0.647
Length
346 amino acids
Sequence
(BLAST)
001: MTRRNGCTIY VGNLPGDIRE REVDDLFYKY GRIVEIDLKI PPRPPGFAFV EFEDARDAED AIYGRDGYNF DGHRLRVELA HGGRGTSSFD RSSSYSSAGQ
101: RGASKRSDYR VMVTGLPSSA SWQDLKDHMR RAGDVCFTDV YREAGATIGI ADYTNYEDMK HAVCFKIRKL DDSEFRNAFS RTYVRVREYD ARRSRSRSRG
201: RNRSKSRSRS HSHSYSRSRS CSYSKSRSPR SRSASESKSP VKARFVLFFT RLGQYHHPDP LLFLPGVTSL QAGVLPGARV CPDLVLRQNQ SESDSALETF
301: RKAELELKDC CTDYEHCASS IAVPSIFLQI LCSLRRSLYA TTLYLT
Best Arabidopsis Sequence Match ( AT1G02840.1 )
(BLAST)
001: MSSRSSRTVY VGNLPGDIRE REVEDLFSKY GPVVQIDLKV PPRPPGYAFV EFDDARDAED AIHGRDGYDF DGHRLRVELA HGGRRSSDDT RGSFNGGGRG
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRSRSR SRSPLPSVQK EGSKSPSKPS PAKSPIHTRS
301: PSR
Arabidopsis Description
SR34Serine/arginine-rich-splicing factor SR34 [Source:UniProtKB/Swiss-Prot;Acc:O22315]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.