Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- plastid 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KXG21829 | Sorghum | nucleus | 69.36 | 86.33 |
TraesCS1A01G229900.1 | Wheat | cytosol, mitochondrion, nucleus | 53.76 | 73.52 |
TraesCS1D01G232100.2 | Wheat | cytosol, mitochondrion, nucleus | 53.47 | 72.83 |
TraesCS1B01G244200.1 | Wheat | cytosol, mitochondrion, nucleus | 56.07 | 72.12 |
Os05t0364600-01 | Rice | nucleus | 63.87 | 69.28 |
Zm00001d040672_P013 | Maize | nucleus | 56.07 | 66.21 |
Bra018581.1-P | Field mustard | cytosol | 44.22 | 65.95 |
Zm00001d041673_P001 | Maize | cytosol | 20.81 | 63.16 |
Solyc01g099810.2.1 | Tomato | nucleus | 47.98 | 62.88 |
Zm00001d047498_P003 | Maize | nucleus | 51.45 | 62.46 |
CDY66028 | Canola | cytosol | 45.38 | 62.06 |
KRG92904 | Soybean | nucleus | 48.84 | 61.23 |
VIT_14s0060g02290.t01 | Wine grape | nucleus | 50.87 | 61.11 |
Bra018550.1-P | Field mustard | nucleus | 43.35 | 57.47 |
AT1G09140.1 | Thale cress | cytosol | 44.51 | 57.46 |
AT4G02430.4 | Thale cress | nucleus | 47.69 | 56.51 |
CDX91319 | Canola | nucleus | 48.55 | 56.19 |
VIT_07s0005g00320.t01 | Wine grape | nucleus | 50.0 | 56.17 |
KRH68188 | Soybean | nucleus | 48.27 | 55.85 |
Solyc09g075090.1.1 | Tomato | nucleus | 48.84 | 55.41 |
KRG96443 | Soybean | nucleus | 50.0 | 55.27 |
CDX97264 | Canola | nucleus | 48.55 | 55.08 |
PGSC0003DMT400037966 | Potato | cytosol, extracellular, nucleus | 46.24 | 54.79 |
AT1G02840.1 | Thale cress | nucleus | 47.98 | 54.79 |
CDY22050 | Canola | nucleus | 48.84 | 54.69 |
PGSC0003DMT400029666 | Potato | nucleus | 49.71 | 54.6 |
CDY50385 | Canola | nucleus | 48.55 | 54.55 |
Bra036267.1-P | Field mustard | nucleus | 48.84 | 54.17 |
CDX95008 | Canola | nucleus | 43.93 | 47.95 |
PGSC0003DMT400063701 | Potato | nucleus | 42.49 | 44.55 |
Solyc06g009060.2.1 | Tomato | nucleus | 27.17 | 35.88 |
Zm00001d009821_P001 | Maize | plastid | 27.17 | 29.56 |
Zm00001d037543_P001 | Maize | nucleus | 13.29 | 25.56 |
Zm00001d011004_P008 | Maize | nucleus | 24.57 | 25.15 |
Zm00001d011005_P005 | Maize | nucleus | 23.99 | 23.51 |
Zm00001d035552_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 23.12 | 21.56 |
Zm00001d035551_P007 | Maize | nucleus | 19.08 | 16.84 |
Protein Annotations
EntrezGene:100285019 | MapMan:16.4.6.1 | Gene3D:3.30.70.330 | UniProt:A0A1D6M1U3 | ProteinID:AQK85211.1 | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43933 | PANTHER:PTHR43933:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000842A5AE | EnsemblPlantsGene:Zm00001d037925 | EnsemblPlants:Zm00001d037925_P006 | EnsemblPlants:Zm00001d037925_T006 |
SEG:seg | : | : | : | : | : |
Description
ASF/SF2-like pre-mRNA splicing factor SRP31%3B ASF/SF2-like pre-mRNA splicing factor SRP31'
Coordinates
chr6:-:142153339..142157699
Molecular Weight (calculated)
39344.2 Da
IEP (calculated)
9.654
GRAVY (calculated)
-0.647
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRRNGCTIY VGNLPGDIRE REVDDLFYKY GRIVEIDLKI PPRPPGFAFV EFEDARDAED AIYGRDGYNF DGHRLRVELA HGGRGTSSFD RSSSYSSAGQ
101: RGASKRSDYR VMVTGLPSSA SWQDLKDHMR RAGDVCFTDV YREAGATIGI ADYTNYEDMK HAVCFKIRKL DDSEFRNAFS RTYVRVREYD ARRSRSRSRG
201: RNRSKSRSRS HSHSYSRSRS CSYSKSRSPR SRSASESKSP VKARFVLFFT RLGQYHHPDP LLFLPGVTSL QAGVLPGARV CPDLVLRQNQ SESDSALETF
301: RKAELELKDC CTDYEHCASS IAVPSIFLQI LCSLRRSLYA TTLYLT
101: RGASKRSDYR VMVTGLPSSA SWQDLKDHMR RAGDVCFTDV YREAGATIGI ADYTNYEDMK HAVCFKIRKL DDSEFRNAFS RTYVRVREYD ARRSRSRSRG
201: RNRSKSRSRS HSHSYSRSRS CSYSKSRSPR SRSASESKSP VKARFVLFFT RLGQYHHPDP LLFLPGVTSL QAGVLPGARV CPDLVLRQNQ SESDSALETF
301: RKAELELKDC CTDYEHCASS IAVPSIFLQI LCSLRRSLYA TTLYLT
001: MSSRSSRTVY VGNLPGDIRE REVEDLFSKY GPVVQIDLKV PPRPPGYAFV EFDDARDAED AIHGRDGYDF DGHRLRVELA HGGRRSSDDT RGSFNGGGRG
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRSRSR SRSPLPSVQK EGSKSPSKPS PAKSPIHTRS
301: PSR
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRSRSR SRSPLPSVQK EGSKSPSKPS PAKSPIHTRS
301: PSR
Arabidopsis Description
SR34Serine/arginine-rich-splicing factor SR34 [Source:UniProtKB/Swiss-Prot;Acc:O22315]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.