Factsheet for Os05t0364600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	plastid
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0155600-01
Os01t0201000-01
Os02t0252100-02
Os03t0270200-01
Os03t0285900-01
Os03t0363800-01
Os03t0374575-01
Os03t0681900-01
Os05t0120100-01
Os05t0162600-01
Os06t0670400-00
Os06t0670500-01
Os07t0623300-01
Os07t0633200-02
Os08t0453800-00
Os09t0513700-01
Os10t0115600-02
Os11t0704700-01
Os12t0572400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02840.1	Os06t0670400-00	AT1G53720.1	16497658
AT1G02840.1	Os06t0670500-01	AT1G53720.1	16497658
AT1G02840.1	Os01t0155600-01	AT2G37340.1	18674533
AT1G02840.1	Os03t0285900-01	AT2G37340.1	18674533
AT1G02840.1	Os05t0120100-01	AT2G37340.1	18674533
AT1G02840.1	Os05t0162600-01	AT2G37340.1	18674533
AT1G02840.1	Os09t0513700-01	AT2G43370.1	15987817
AT1G02840.1	Os03t0374575-01	AT3G13570.1	18674533
AT1G02840.1	Os07t0633200-02	AT3G13570.1	18674533
AT1G02840.1	Os10t0115600-02	AT3G50670.1	18674533
AT1G02840.1	Os02t0252100-02	AT3G55460.1	18674533
AT1G02840.1	Os11t0704700-01	AT3G55460.1	18674533
AT1G02840.1	Os12t0572400-01	AT3G55460.1	18674533
AT1G02840.1	Os03t0363800-01	AT5G18810.1	18674533
AT1G02840.1	Os07t0623300-01	AT5G64200.2	18674533
AT1G02840.1	Os01t0201000-01	AT5G64960.1	18208522
AT1G02840.1	Os08t0453800-00	AT5G64960.1	18208522
AT1G09140.1	Os06t0670400-00	AT1G53720.1	16497658
AT1G09140.1	Os06t0670500-01	AT1G53720.1	16497658
AT1G09140.1	Os03t0270200-01	AT2G29210.1	21798944
AT1G09140.1	Os03t0374575-01	AT3G13570.1	18674533
AT1G09140.1	Os07t0633200-02	AT3G13570.1	18674533
AT1G09140.1	Os02t0252100-02	AT3G55460.1	18674533
AT1G09140.1	Os11t0704700-01	AT3G55460.1	18674533
AT1G09140.1	Os12t0572400-01	AT3G55460.1	18674533
AT1G09140.1	Os03t0681900-01	AT5G04280.1	21798944
AT1G09140.1	Os03t0363800-01	AT5G18810.1	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG21829	Sorghum	nucleus	74.61	85.61
TraesCS1A01G229900.1	Wheat	cytosol, mitochondrion, nucleus	66.46	83.79
TraesCS1D01G232100.2	Wheat	cytosol, mitochondrion, nucleus	65.83	82.68
TraesCS1B01G244200.1	Wheat	cytosol, mitochondrion, nucleus	68.65	81.41
Bra018581.1-P	Field mustard	cytosol	52.66	72.41
Os03t0344100-02	Rice	mitochondrion, nucleus	64.26	71.68
Os07t0673500-01	Rice	nucleus	65.2	70.27
CDY66028	Canola	cytosol	55.49	69.96
VIT_14s0060g02290.t01	Wine grape	nucleus	62.7	69.44
Solyc01g099810.2.1	Tomato	nucleus	55.8	67.42
AT1G09140.1	Thale cress	cytosol	55.49	66.04
CDX91319	Canola	nucleus	60.81	64.88
Zm00001d037925_P006	Maize	cytosol, nucleus, plastid	69.28	63.87
CDX97264	Canola	nucleus	60.5	63.28
KRG92904	Soybean	nucleus	54.55	63.04
Bra018550.1-P	Field mustard	nucleus	51.41	62.84
CDY22050	Canola	nucleus	60.5	62.46
Bra036267.1-P	Field mustard	nucleus	60.81	62.18
CDY50385	Canola	nucleus	59.87	62.01
KRG96443	Soybean	nucleus	60.5	61.66
VIT_07s0005g00320.t01	Wine grape	nucleus	59.25	61.36
PGSC0003DMT400029666	Potato	nucleus	60.19	60.95
AT1G02840.1	Thale cress	nucleus	57.37	60.4
PGSC0003DMT400037966	Potato	cytosol, extracellular, nucleus	54.86	59.93
AT4G02430.4	Thale cress	nucleus	54.86	59.93
Solyc09g075090.1.1	Tomato	nucleus	56.74	59.34
KRH68188	Soybean	nucleus	55.49	59.2
CDX95008	Canola	nucleus	52.98	53.31
PGSC0003DMT400063701	Potato	nucleus	48.59	46.97
Solyc06g009060.2.1	Tomato	nucleus	36.99	45.04
Os01t0316600-01	Rice	plastid	15.99	41.13
Os05t0120100-01	Rice	mitochondrion, nucleus	31.35	30.96
Os01t0155600-01	Rice	nucleus	31.35	30.86
Os03t0285900-01	Rice	nucleus	31.66	30.61
Os05t0162600-01	Rice	nucleus	23.2	21.89

Protein Annotations

EnsemblPlants:Os05t0364600-01	EnsemblPlantsGene:Os05g0364600	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR43933	PANTHER:PTHR43933:SF1	PFAM:PF00076	PFscan:PS50102	ProteinID:BAS93629.1	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000393A2C4	UniProt:A0A0P0WLH4	MapMan:16.4.6.1	:

Description

Similar to pre-mRNA-splicing factor SF2. (Os05t0364600-01)

Coordinates

chr5:+:17446137..17453102

Molecular Weight (calculated)

36107.1 Da

IEP (calculated)

11.707

GRAVY (calculated)

-1.172

Length

319 amino acids

Sequence
(BLAST)

001: SFSSPPPPPP PPPPPPRRRR RVAGTMSRRN SRTIYVGNLP GDIREREVED LFYKYGRIVD IDLKIPPRPP GYAFVEFEDP RDAQDAIYGR HGYDFDGHRL
101: RVELAHGGRG PSFDRSSSYS SAGRRGAAKR TDYRVMVTGL PSSASWQDLK DHMRRAGDVC FSDVYREGGA TIGIVDYTNY EDMKQAIRKL DDSEFRNAFS
201: RAYIRVREYD SAKRSRSRSR GRSHSRSISR SRSRSRSISR SRSRSYSRSR SPRSRSASRS HSPVKERSRS ASQSRSPVKE RSPSRSPPPA TSPPREKSAS
301: KSPVKSRSLS RSPSPVKSE

Best Arabidopsis Sequence Match ( AT1G02840.1 )
(BLAST)

001: MSSRSSRTVY VGNLPGDIRE REVEDLFSKY GPVVQIDLKV PPRPPGYAFV EFDDARDAED AIHGRDGYDF DGHRLRVELA HGGRRSSDDT RGSFNGGGRG
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRSRSR SRSPLPSVQK EGSKSPSKPS PAKSPIHTRS
301: PSR

Arabidopsis Description

SR34Serine/arginine-rich-splicing factor SR34 [Source:UniProtKB/Swiss-Prot;Acc:O22315]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.