Subcellular Localization
min:
: max
Winner_takes_all: extracellular, golgi, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- golgi 5
- plasma membrane 4
- endoplasmic reticulum 5
- vacuole 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES18924 | Sorghum | nucleus | 84.64 | 92.08 |
| Zm00001d011005_P005 | Maize | nucleus | 81.67 | 85.84 |
| Os05t0120100-01 | Rice | mitochondrion, nucleus | 71.16 | 81.73 |
| Os03t0285900-01 | Rice | nucleus | 70.89 | 79.7 |
| Zm00001d011004_P008 | Maize | nucleus | 66.85 | 73.37 |
| TraesCS1B01G065900.2 | Wheat | nucleus | 64.96 | 70.67 |
| TraesCS1D01G051900.1 | Wheat | nucleus | 64.96 | 70.47 |
| TraesCS1A01G049700.1 | Wheat | nucleus | 64.96 | 70.47 |
| HORVU1Hr1G009950.7 | Barley | nucleus, plastid | 64.96 | 65.49 |
| PGSC0003DMT400060435 | Potato | nucleus | 52.83 | 65.33 |
| KRH67593 | Soybean | endoplasmic reticulum | 49.6 | 64.11 |
| KRG95876 | Soybean | nucleus | 49.33 | 63.76 |
| GSMUA_Achr10P... | Banana | nucleus | 55.26 | 63.08 |
| KRH67596 | Soybean | nucleus | 50.4 | 62.54 |
| KRG95883 | Soybean | nucleus | 49.06 | 61.28 |
| GSMUA_Achr6P15450_001 | Banana | nucleus | 54.99 | 60.53 |
| VIT_08s0040g02860.t01 | Wine grape | nucleus | 43.4 | 60.53 |
| CDX80835 | Canola | nucleus | 43.13 | 60.38 |
| CDX79732 | Canola | nucleus | 47.17 | 59.73 |
| CDX78183 | Canola | nucleus | 45.55 | 59.72 |
| CDY11223 | Canola | nucleus | 42.32 | 59.7 |
| CDX73550 | Canola | nucleus | 45.55 | 59.51 |
| AT2G37340.1 | Thale cress | nucleus | 46.09 | 58.97 |
| AT3G53500.2 | Thale cress | mitochondrion, nucleus | 45.01 | 58.8 |
| Solyc05g054920.2.1 | Tomato | nucleus | 53.1 | 58.46 |
| CDY07586 | Canola | mitochondrion, nucleus | 44.74 | 57.64 |
| Bra007004.1-P | Field mustard | nucleus | 45.82 | 57.24 |
| PGSC0003DMT400061471 | Potato | nucleus | 48.52 | 57.14 |
| Solyc09g005980.2.1 | Tomato | nucleus | 48.52 | 57.14 |
| CDY52755 | Canola | mitochondrion, nucleus | 44.74 | 57.04 |
| Bra003139.1-P | Field mustard | mitochondrion, nucleus | 44.74 | 57.04 |
| Bra005756.1-P | Field mustard | nucleus | 35.04 | 56.52 |
| Bra023114.1-P | Field mustard | nucleus | 47.44 | 55.7 |
| CDY46773 | Canola | nucleus | 47.17 | 55.38 |
| Zm00001d037543_P001 | Maize | nucleus | 23.45 | 48.33 |
| KRH42195 | Soybean | endoplasmic reticulum | 34.5 | 46.55 |
| KRH58317 | Soybean | nucleus | 25.34 | 42.92 |
| Zm00001d035551_P007 | Maize | nucleus | 45.28 | 42.86 |
| Zm00001d047498_P003 | Maize | nucleus | 23.72 | 30.88 |
| Zm00001d040672_P013 | Maize | nucleus | 23.72 | 30.03 |
| Zm00001d041673_P001 | Maize | cytosol | 7.28 | 23.68 |
| Zm00001d037925_P006 | Maize | cytosol, nucleus, plastid | 21.56 | 23.12 |
| Zm00001d009821_P001 | Maize | plastid | 12.67 | 14.78 |
Protein Annotations
| EntrezGene:100272956 | MapMan:16.4.6.5 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | UniProt:A0A1D6LH52 | ProteinID:AQK79216.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0008270 | InterPro:IPR000504 |
| InterPro:IPR001878 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00098 | PFscan:PS50102 |
| PFscan:PS50158 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF25 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00343 |
| SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | TMHMM:TMhelix | UniParc:UPI000843418E | EnsemblPlantsGene:Zm00001d035552 |
| EnsemblPlants:Zm00001d035552_P001 | EnsemblPlants:Zm00001d035552_T001 | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg | : |
Description
Serine/arginine-rich splicing factor RS2Z32
Coordinates
chr6:+:32906724..32909899
Molecular Weight (calculated)
41319.9 Da
IEP (calculated)
11.461
GRAVY (calculated)
-1.305
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMGTLQVAT FTALLFRVFV AGLDCFGPLI VFFLWTGDMP RYDDRYGGTR LYVGRLAPRT RSRDLEYLFG KYGRIREVEL KRDYAFIEFS EHRDADEARY
101: QLDGRDVDGS RIVVEFAKGV PRGPGGSREY MGRGPPPGTG RCFNCGMDGH WARDCKAGDW KNKCYRCGER GHIERNCQNS PRSVRRERSY SRSPSPRRGR
201: GRSPSYSRSR SRSRSRSYSR SRSLSGSPRG GRRDRDDRRS RSLSYSRSPM RSPPAKEKER SPTPGGSRSP RSRSPQDQVM SPPPKDNGDR NGSDRGDSPR
301: GRENSRSRSR SRSPSGGNRS PAANGRSPSP RGDRTPSPMA DRSPSPKGNG NNDGGDDDTG RGGSPTGSKS P
101: QLDGRDVDGS RIVVEFAKGV PRGPGGSREY MGRGPPPGTG RCFNCGMDGH WARDCKAGDW KNKCYRCGER GHIERNCQNS PRSVRRERSY SRSPSPRRGR
201: GRSPSYSRSR SRSRSRSYSR SRSLSGSPRG GRRDRDDRRS RSLSYSRSPM RSPPAKEKER SPTPGGSRSP RSRSPQDQVM SPPPKDNGDR NGSDRGDSPR
301: GRENSRSRSR SRSPSGGNRS PAANGRSPSP RGDRTPSPMA DRSPSPKGNG NNDGGDDDTG RGGSPTGSKS P
001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
Arabidopsis Description
RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.