Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G051900.1 | Wheat | nucleus | 87.77 | 94.44 |
| TraesCS1A01G049700.1 | Wheat | nucleus | 87.5 | 94.15 |
| TraesCS1B01G065900.2 | Wheat | nucleus | 86.96 | 93.84 |
| KXG21152 | Sorghum | nucleus | 67.39 | 79.49 |
| Os05t0120100-01 | Rice | mitochondrion, nucleus | 69.02 | 78.64 |
| Os03t0285900-01 | Rice | nucleus | 69.02 | 76.97 |
| EES18924 | Sorghum | nucleus | 66.58 | 71.85 |
| Zm00001d011005_P005 | Maize | nucleus | 67.12 | 69.97 |
| Zm00001d011004_P008 | Maize | nucleus | 63.86 | 69.53 |
| KRH67593 | Soybean | endoplasmic reticulum | 52.72 | 67.6 |
| PGSC0003DMT400060435 | Potato | nucleus | 54.62 | 67.0 |
| KRG95876 | Soybean | nucleus | 51.9 | 66.55 |
| Zm00001d035552_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 65.49 | 64.96 |
| KRH67596 | Soybean | nucleus | 52.17 | 64.21 |
| VIT_08s0040g02860.t01 | Wine grape | nucleus | 45.92 | 63.53 |
| KRG95883 | Soybean | nucleus | 50.82 | 62.96 |
| CDX78183 | Canola | nucleus | 47.83 | 62.19 |
| CDX79732 | Canola | nucleus | 49.46 | 62.12 |
| GSMUA_Achr10P... | Banana | nucleus | 54.62 | 61.85 |
| CDX73550 | Canola | nucleus | 47.55 | 61.62 |
| CDX80835 | Canola | nucleus | 44.29 | 61.51 |
| AT2G37340.1 | Thale cress | nucleus | 48.37 | 61.38 |
| AT3G53500.2 | Thale cress | mitochondrion, nucleus | 47.28 | 61.27 |
| CDY11223 | Canola | nucleus | 43.75 | 61.22 |
| GSMUA_Achr6P15450_001 | Banana | nucleus | 55.16 | 60.24 |
| CDY07586 | Canola | mitochondrion, nucleus | 47.01 | 60.07 |
| Solyc05g054920.2.1 | Tomato | nucleus | 54.89 | 59.94 |
| CDY52755 | Canola | mitochondrion, nucleus | 47.01 | 59.45 |
| Bra003139.1-P | Field mustard | mitochondrion, nucleus | 47.01 | 59.45 |
| Bra007004.1-P | Field mustard | nucleus | 47.83 | 59.26 |
| Bra005756.1-P | Field mustard | nucleus | 36.68 | 58.7 |
| Bra023114.1-P | Field mustard | nucleus | 50.27 | 58.54 |
| CDY46773 | Canola | nucleus | 50.0 | 58.23 |
| Solyc09g005980.2.1 | Tomato | nucleus | 49.73 | 58.1 |
| PGSC0003DMT400061471 | Potato | nucleus | 49.46 | 57.78 |
| HORVU1Hr1G024060.21 | Barley | nucleus | 46.47 | 57.19 |
| KRH42195 | Soybean | endoplasmic reticulum | 36.41 | 48.73 |
| KRH58317 | Soybean | nucleus | 25.54 | 42.92 |
| Zm00001d035551_P007 | Maize | nucleus | 44.02 | 41.33 |
| HORVU2Hr1G019410.4 | Barley | mitochondrion, nucleus | 24.46 | 31.47 |
| HORVU4Hr1G046940.7 | Barley | mitochondrion, nucleus | 24.73 | 30.85 |
| HORVU3Hr1G064550.7 | Barley | nucleus, peroxisome | 24.73 | 27.08 |
Protein Annotations
| MapMan:16.4.6.5 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | UniProt:A0A287ELM6 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0008270 | EnsemblPlantsGene:HORVU1Hr1G009950 | EnsemblPlants:HORVU1Hr1G009950.7 | InterPro:IPR000504 |
| InterPro:IPR001878 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00098 | PFscan:PS50102 |
| PFscan:PS50158 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF25 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00343 |
| SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | UniParc:UPI000B4605FE | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:+:22563575..22568062
Molecular Weight (calculated)
41259.6 Da
IEP (calculated)
11.828
GRAVY (calculated)
-1.511
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: NSLPPSVPPP YLQPGRPRRR SVRPRVLRRR PAPEEMPRYD DRYGNARLYV GRLSSRTRSR DLEYLFSKYG RIREVELKRD YAFIEFSDSR DADEARYNLD
101: GRDVDGSRII VEFAKGVPRG SGGSREREYV GRGPPPGTGR CFNCGIDGHW ARDCKAGDWK NKCYRCGERG HIERNCQNSP RSLRRERSYS RSPSPRRGRA
201: RSRSYSRSRS YSRSRSRSYS ESPRGRRTER DERRSRSISY SRSPRRSLSP EAKEMDRSPT PDRSRSPRRS ISPVAKDNGD SPRGRRTSRS PSDGYRSPVA
301: NGRSPRSPAN NGSPSPARDN KGSPSPRGNN GSPSPKGNGN GGSPSPRGNG DGDGLRGSGS PRGRSASP
101: GRDVDGSRII VEFAKGVPRG SGGSREREYV GRGPPPGTGR CFNCGIDGHW ARDCKAGDWK NKCYRCGERG HIERNCQNSP RSLRRERSYS RSPSPRRGRA
201: RSRSYSRSRS YSRSRSRSYS ESPRGRRTER DERRSRSISY SRSPRRSLSP EAKEMDRSPT PDRSRSPRRS ISPVAKDNGD SPRGRRTSRS PSDGYRSPVA
301: NGRSPRSPAN NGSPSPARDN KGSPSPRGNN GSPSPKGNGN GGSPSPRGNG DGDGLRGSGS PRGRSASP
001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
Arabidopsis Description
RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.