Factsheet for HORVU6Hr1G083840.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G009950.7
HORVU1Hr1G024060.21
HORVU1Hr1G030660.5
HORVU1Hr1G046870.5
HORVU2Hr1G019410.4
HORVU3Hr1G051340.19
HORVU3Hr1G064550.7
HORVU4Hr1G046940.7
HORVU5Hr1G091970.12
HORVU6Hr1G053760.52
HORVU7Hr1G067800.6

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24590.1	HORVU2Hr1G019410.4	AT1G09140.1	21798944
AT2G24590.1	HORVU3Hr1G064550.7	AT1G09140.1	21798944
AT2G24590.1	HORVU4Hr1G046940.7	AT1G09140.1	21798944
AT2G24590.1	HORVU7Hr1G067800.6	AT3G21215.1	21798944
AT2G24590.1	HORVU3Hr1G051340.19	AT4G32660.1	21798944
AT4G31580.1	HORVU1Hr1G009950.7	AT2G37340.1	18674533
AT4G31580.1	HORVU1Hr1G024060.21	AT2G37340.1	18674533
AT4G31580.1	HORVU1Hr1G030660.5	AT3G50670.1	10593939
AT4G31580.1	HORVU1Hr1G046870.5	AT3G50670.1	10593939
AT4G31580.1	HORVU1Hr1G030660.5	AT3G50670.1	9761791
AT4G31580.1	HORVU1Hr1G046870.5	AT3G50670.1	9761791
AT4G31580.1	HORVU5Hr1G091970.12	AT4G24740.1	10593939
AT4G31580.1	HORVU6Hr1G053760.52	AT4G24740.1	10593939

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G349500.1	Wheat	nucleus	78.86	100.0
TraesCS6B01G382600.1	Wheat	nucleus	78.46	99.48
TraesCS6D01G332000.1	Wheat	nucleus	76.02	96.39
EES07659	Sorghum	nucleus	58.13	87.73
Os02t0789400-01	Rice	nucleus	60.57	80.54
GSMUA_Achr8P24800_001	Banana	nucleus	59.35	80.22
GSMUA_Achr4P09230_001	Banana	nucleus	56.91	77.78
VIT_04s0069g00800.t01	Wine grape	nucleus	53.25	72.38
PGSC0003DMT400067677	Potato	nucleus	53.66	72.13
KRH16160	Soybean	endoplasmic reticulum	51.22	70.79
PGSC0003DMT400075974	Potato	nucleus	52.44	70.49
KRH04931	Soybean	nucleus	50.81	70.22
CDY13444	Canola	nucleus	54.06	66.83
CDX72313	Canola	nucleus	53.25	66.5
Bra023994.1-P	Field mustard	nucleus	53.66	66.33
Zm00001d052062_P002	Maize	extracellular	47.56	65.73
AT4G31580.1	Thale cress	nucleus	52.85	65.0
AT2G24590.1	Thale cress	nucleus	51.63	64.8
Zm00001d004066_P001	Maize	cytosol, golgi, nucleus	39.84	64.47
Zm00001d045330_P001	Maize	nucleus	38.62	62.5
CDY45585	Canola	nucleus	49.59	62.24
CDY20328	Canola	nucleus	49.59	62.24
Bra032082.1-P	Field mustard	nucleus	50.41	61.08
Solyc08g069120.2.1	Tomato	nucleus	54.88	55.56
Zm00001d018341_P007	Maize	cytosol, nucleus, plasma membrane	51.22	54.31
HORVU7Hr1G031320.1	Barley	nucleus	60.57	51.74
Zm00001d028789_P001	Maize	cytosol	42.28	46.85
VIT_10s0042g00400.t01	Wine grape	endoplasmic reticulum, extracellular	7.32	46.15

Protein Annotations

MapMan:16.4.6.4	Gene3D:3.30.70.330	Gene3D:4.10.60.10	UniProt:A0A287UZ62	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0008270	EnsemblPlantsGene:HORVU6Hr1G083840	EnsemblPlants:HORVU6Hr1G083840.4	InterPro:IPR000504
InterPro:IPR001878	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102
PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF26	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343
SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI000B479EE8	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:552804619..552807784

Molecular Weight (calculated)

27437.2 Da

IEP (calculated)

12.090

GRAVY (calculated)

-1.225

Length

246 amino acids

Sequence
(BLAST)

001: GTRVSPPAPL SLPQATRKPR FRRRRRCRDA ELARAPPTNG APAPRRRRDL FTMARLYVGN LDARVTAGEL EDEFRVFGVL RSVWVARKPP GFAFIDFDDK
101: RDAEDALRDL DGKNGWRVEL SRNDRGDRGG RGGGGGGGGG GRDRGGSDMK CYECGESGHF ARECRLRIGA GGLGSGRRRS RSRSRSRSPR YRRSPSYGRR
201: SYSPRDRSPR RRSASPAPAR GRSYSKSPVR ARDDSPDAKG YRRSRS

Best Arabidopsis Sequence Match ( AT2G24590.1 )
(BLAST)

001: MSRVYVGNLD PRVTERELED EFRSFGVIRS VWVARRPPGY AFLDFEDSRD ARDAIREVDG KNGWRVEQSH NRGGGGGRGG GRGGGDGGRG RGGSDLKCYE
101: CGESGHFARE CRSRGGSGGR RRSRSRSRSP PRYRKSPTYG GRRSYSPRAR SPPPPRRRSP SPRGRNYSRS PPPYRARDEV PYANGNGLKD VRRSRS

Arabidopsis Description

RSZ22ASerine/arginine-rich splicing factor RSZ22A [Source:UniProtKB/Swiss-Prot;Acc:Q9SJA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.