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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 4
PPI

Inferred distinct locusB in Crop

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5B01G371800.1 Wheat cytosol 99.53 99.53
TraesCS5D01G378900.2 Wheat cytosol, mitochondrion 99.29 99.29
TraesCS5A01G369500.2 Wheat cytosol 99.29 99.29
KXG35096 Sorghum cytosol 85.38 85.38
Zm00001d005361_P007 Maize cytosol, plastid 82.31 82.7
GSMUA_Achr11P... Banana cytosol 62.97 78.76
VIT_17s0000g09500.t01 Wine grape nucleus 73.58 71.72
KRH57157 Soybean cytosol 70.75 69.77
PGSC0003DMT400046853 Potato cytosol 70.99 69.68
KRH63654 Soybean nucleus 69.81 69.65
KRH54290 Soybean cytosol, nucleus 69.34 69.18
AT4G24740.1 Thale cress nucleus 69.1 68.62
Solyc03g112050.2.1 Tomato cytosol 62.26 68.04
VIT_01s0137g00580.t01 Wine grape nucleus 68.63 67.36
PGSC0003DMT400030615 Potato nucleus 67.22 66.43
Solyc05g013770.2.1 Tomato nucleus 67.45 66.36
HORVU6Hr1G061750.11 Barley nucleus 67.22 65.52
KRH03872 Soybean nucleus 71.23 63.98
HORVU6Hr1G053760.52 Barley cytosol 65.33 63.53
HORVU3Hr1G051340.19 Barley golgi, plasma membrane, plastid 60.85 61.43
CDY34307 Canola plastid 69.81 40.72
CDY03422 Canola plastid 69.58 40.58
Bra013829.1-P Field mustard nucleus 67.22 39.8
HORVU5Hr1G002400.1 Barley mitochondrion 17.69 28.09
HORVU4Hr1G018630.1 Barley cytosol, mitochondrion, nucleus, plastid 11.56 26.78
HORVU3Hr1G049750.1 Barley mitochondrion 11.32 26.23
HORVU7Hr1G058230.1 Barley cytosol 6.6 25.23
HORVU1Hr1G034750.1 Barley cytosol 9.43 25.16
HORVU6Hr1G019910.4 Barley cytosol 9.2 24.53
HORVU3Hr1G021690.1 Barley cytosol 13.44 22.98
HORVU1Hr1G094650.1 Barley nucleus 15.8 22.79
HORVU5Hr1G087690.2 Barley cytosol, plastid 26.18 22.42
HORVU2Hr1G091920.1 Barley cytosol 15.8 22.11
HORVU7Hr1G090500.1 Barley cytosol 15.09 21.62
HORVU3Hr1G021740.1 Barley cytosol 12.97 21.48
HORVU4Hr1G059640.3 Barley golgi, mitochondrion, plasma membrane 17.69 20.78
HORVU5Hr1G046420.1 Barley nucleus 12.74 20.77
HORVU1Hr1G082710.1 Barley nucleus, plastid 20.52 20.67
HORVU2Hr1G066530.1 Barley nucleus 19.58 20.54
HORVU5Hr1G094810.3 Barley nucleus 26.89 20.32
HORVU6Hr1G081350.5 Barley nucleus 16.04 18.84
HORVU7Hr1G121360.1 Barley cytosol, mitochondrion, nucleus 13.92 17.77
HORVU1Hr1G071160.1 Barley nucleus 25.94 15.45
HORVU2Hr1G053190.2 Barley cytosol 25.71 14.65
HORVU4Hr1G007330.12 Barley nucleus, plastid 22.41 13.93
HORVU0Hr1G016820.3 Barley plastid 25.24 11.85
HORVU6Hr1G068620.1 Barley nucleus 25.71 11.65
HORVU5Hr1G000200.27 Barley cytosol, nucleus 25.94 11.57
HORVU4Hr1G008530.1 Barley nucleus 28.07 10.8
HORVU5Hr1G000140.1 Barley mitochondrion 6.37 4.75
HORVU3Hr1G087550.7 Barley cytosol 3.77 3.55
CDY03423 Canola cytosol, peroxisome, plastid 1.18 1.6
Bra013830.1-P Field mustard plastid 0.47 0.68
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.3.2Gene3D:3.30.200.20EMBL:AK353837UniProt:F2CQD5GO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0005488GO:GO:0005524GO:GO:0006464
GO:GO:0006468GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016301GO:GO:0016740
GO:GO:0019538EnsemblPlantsGene:HORVU5Hr1G091970EnsemblPlants:HORVU5Hr1G091970.12InterPro:IPR000719InterPro:Kinase-like_dom_sfPFAM:PF00069
ScanProsite:PS00108PFscan:PS50011PANTHER:PTHR24058PANTHER:PTHR24058:SF52InterPro:Prot_kinase_domSMART:SM00220
SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASUniParc:UPI00020045E1SEG:seg::
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CQD5]
Coordinates
chrchr5H:-:587385963..587390585
Molecular Weight (calculated)
48188.2 Da
IEP (calculated)
8.950
GRAVY (calculated)
-0.374
Length
424 amino acids
Sequence
(BLAST)
001: MATRCAAAAD LPAGRPRKRA RHGWDVAPAT KAQITFCGQE VGDMTTMVLP AHPPDYTCFS LLSKGVARNA SPPRREDDKD GHYVFAVGEN LTSRYKIYRK
101: MGEGTFGQVL ECWDRERKEM VAIKIVRAVN KYSDAAMIEI DVLQKLARND ATGKHCVQIR NWFDYRNHIC IVCEKLGPSL YDFLRKTAYR PFPIDLVREL
201: GEQLLESVAF MHGLKLIHTD LKPENILLVS SEDAKLAENK DGSFSKKVPK SSAIKLIDFG STAYGHQDCS YIVSTRHYRA PEVILGHGWS YPCDIWSIGC
301: ILVELCSGET LFQTHENLEH LAMMERVLGP LPRHMLERAD HHAQKYIRRG RLNWPEGATT RESMRAVLKL PRLQNLVMQH VDHSAGDLIG LLQGLLAYEP
401: SARLTAQEAL SHRFFRRHRE RRSL
Best Arabidopsis Sequence Match ( AT3G53570.1 )
(BLAST)
001: MQSSVYRDKA SSIAMILETQ RNVEFPHRIV DKRPRKRPRL TWDAAPPLLP PPPPPTVFQP PLYYGPEFAS GLVPNFVYPN MFYNGLPRQG SPPWRPDDKD
101: GHYVFVVGDT LTPRYQILSK MGEGTFGQVL ECFDNKNKEV VAIKVIRSIN KYREAAMIEI DVLQRLTRHD VGGSRCVQIR NWFDYRNHIC IVFEKLGPSL
201: YDFLRKNSYR SFPIDLVREL GRQLLESVAY MHDLRLIHTD LKPENILLVS SEYIKIPDYK FLSRPTKDGS YFKNLPKSSA IKLIDFGSTT FEHQDHNYIV
301: STRHYRAPEV ILGVGWNYPC DLWSIGCILV ELCSGEALFQ THENLEHLAM MERVLGPLPP HMVLRADRRS EKYFRRGAKL DWPEGATSRD SLKAVWKLPR
401: LPNLIMQHVD HSAGDLIDLL QGLLRYDPTE RFKAREALNH PFFTRSREQS IPPFNPNPHP FLYNQKN
Arabidopsis Description
AFC1AT3G53570 protein [Source:UniProtKB/TrEMBL;Acc:B9DH08]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.