Factsheet for Solyc05g013770.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030615	Potato	nucleus	98.61	99.07
GSMUA_Achr11P...	Banana	cytosol	63.81	81.12
GSMUA_Achr8P28600_001	Banana	cytosol	39.68	79.17
VIT_01s0137g00580.t01	Wine grape	nucleus	78.65	78.47
Os12t0460800-03	Rice	cytosol	31.79	72.87
Solyc03g112050.2.1	Tomato	cytosol	65.43	72.68
TraesCS6A01G210100.1	Wheat	cytosol	67.75	67.91
TraesCS6B01G238900.1	Wheat	cytosol	67.75	67.91
TraesCS6D01G193300.1	Wheat	cytosol	67.52	67.67
TraesCS5A01G369500.2	Wheat	cytosol	66.36	67.45
TraesCS5B01G371800.1	Wheat	cytosol	66.36	67.45
TraesCS5D01G378900.2	Wheat	cytosol, mitochondrion	66.36	67.45
KXG35096	Sorghum	cytosol	66.36	67.45
HORVU5Hr1G091970.12	Barley	cytosol, mitochondrion	66.36	67.45
GSMUA_Achr3P17160_001	Banana	cytosol	69.84	67.04
Zm00001d005361_P007	Maize	cytosol, plastid	64.27	65.64
KXG30551	Sorghum	cytosol	67.52	65.25
Zm00001d050970_P003	Maize	cytosol	67.05	64.8
Zm00001d017096_P005	Maize	cytosol	66.59	64.49
HORVU6Hr1G053760.52	Barley	cytosol	63.11	62.39
KXG37288	Sorghum	cytosol	53.36	60.05
Solyc02g082550.2.1	Tomato	cytosol	25.52	24.66
Solyc10g085720.1.1	Tomato	nucleus	27.15	22.37
Solyc09g008790.2.1	Tomato	cytosol	27.15	21.12
Solyc06g051510.2.1	Tomato	cytosol	24.83	20.62
Solyc06g074700.2.1	Tomato	nucleus	25.99	20.25
Solyc11g066650.1.1	Tomato	nucleus	26.68	19.86
Solyc05g009540.2.1	Tomato	nucleus	28.07	12.04
Solyc03g097350.2.1	Tomato	plastid	26.22	11.91
Solyc03g098150.2.1	Tomato	nucleus	26.45	9.79
Solyc06g072340.2.1	Tomato	nucleus	25.75	9.17

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.3.2	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000719	UniProt:K4BY98	InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR24058	PANTHER:PTHR24058:SF55	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc05g013770.2	EnsemblPlants:Solyc05g013770.2.1	UniParc:UPI000276609E	:

Description

No Description!

Coordinates

chr5:-:7077909..7082147

Molecular Weight (calculated)

50469.7 Da

IEP (calculated)

9.133

GRAVY (calculated)

-0.533

Length

431 amino acids

Sequence
(BLAST)

001: MEMDYVTEYP HSYMDRRPKK RPRLDWDPSH TPKAQSGIYY GQEVGNSSSY VHSRLLPDHD NLYVKGLAQK GSPPRREDDK DGHYLFELGE NLTTRYKILK
101: KIGEGTFGQV LECWDREQKE FVAIKIIRSI KKYREAAMVE IDVLQLLGRY DRGGSRCVQL RNWFDYRNHI CLVFEKLGPS LFDFLRKNSY RAFPVDLVRE
201: IGRQLLECVA FMHDMRLIHT DLKPENILFV SADYIKVPDY KGTPWSHRDR SFYKRLPKSS AIKVIDFGST AYERPDHNYI VSTRHYRAPE VILGLGWSYP
301: CDLWSVGCIL VELCSGEALF QTHENLEHLA MMERVLGTLP SQMLNKVDRH AEKYVRRGRL DWPEGATSRE SIKSVIKLPR LQNLVMQHVD HSAGDLIDLL
401: QGLLRFDPSI RMTARDALRH PFFTRDQFRR L

Best Arabidopsis Sequence Match ( AT4G24740.1 )
(BLAST)

001: MEMERVHEFP HTHMDRRPRK RARLGWDVLP QATKAQVGMF CGQEIGNISS FASSGAPSDN SSSLCVKGVA RNGSPPWRED DKDGHYIFEL GDDLTPRYKI
101: YSKMGEGTFG QVLECWDRER KEMVAVKIVR GVKKYREAAM IEIEMLQQLG KHDKGGNRCV QIRNWFDYRN HICIVFEKLG SSLYDFLRKN NYRSFPIDLV
201: REIGWQLLEC VAFMHDLRMI HTDLKPENIL LVSSDYVKIP EYKGSRLQRD VCYKRVPKSS AIKVIDFGST TYERQDQTYI VSTRHYRAPE VILGLGWSYP
301: CDVWSVGCII VELCTGEALF QTHENLEHLA MMERVLGPFP QQMLKKVDRH SEKYVRRGRL DWPDGATSRD SLKAVLKLPR LQNLIMQHVD HSAGELINMV
401: QGLLRFDPSE RITAREALRH PFFARRR

Arabidopsis Description

AFC2At4g24740 [Source:UniProtKB/TrEMBL;Acc:Q1EBU3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.