Factsheet for Solyc05g009540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033770	Potato	mitochondrion	93.13	90.26
Os12t0640800-01	Rice	mitochondrion	19.6	86.78
PGSC0003DMT400053226	Potato	mitochondrion	47.66	57.3
AT3G53640.1	Thale cress	cytosol	36.12	56.54
TraesCS4D01G044900.2	Wheat	nucleus	32.64	52.31
TraesCS4D01G044600.1	Wheat	nucleus	32.94	52.04
TraesCS4B01G044900.1	Wheat	nucleus	32.74	51.97
TraesCS4A01G269100.1	Wheat	nucleus	32.44	51.75
AT3G25840.1	Thale cress	nucleus	46.07	49.52
KRG90793	Soybean	nucleus	48.36	49.14
KXG24155	Sorghum	nucleus	46.37	48.74
KRH35970	Soybean	nucleus	48.16	48.55
VIT_01s0011g03350.t01	Wine grape	nucleus	52.64	48.53
TraesCS5D01G000600.1	Wheat	nucleus	45.67	48.37
TraesCS5B01G001400.1	Wheat	nucleus	45.57	47.96
TraesCS5A01G000100.1	Wheat	nucleus	45.37	47.9
CDY13591	Canola	nucleus	42.19	47.86
Bra025165.1-P	Field mustard	nucleus	42.79	47.72
Bra017346.1-P	Field mustard	nucleus	42.19	47.64
CDX83561	Canola	nucleus	42.29	47.12
Zm00001d031231_P057	Maize	nucleus	45.27	47.0
AT1G13350.3	Thale cress	nucleus	38.81	46.76
HORVU5Hr1G000200.27	Barley	cytosol, nucleus	43.68	46.16
OQU80322	Sorghum	nucleus	27.96	45.77
Zm00001d041183_P004	Maize	nucleus	45.77	44.02
GSMUA_Achr1P22430_001	Banana	mitochondrion	44.78	43.77
GSMUA_Achr1P12470_001	Banana	nucleus	46.77	43.36
HORVU4Hr1G007330.12	Barley	nucleus, plastid	28.26	41.64
KRH75392	Soybean	nucleus	30.95	36.25
HORVU5Hr1G000140.1	Barley	mitochondrion	18.81	33.27
Os03t0710100-01	Rice	nucleus	25.97	32.87
CDY04183	Canola	cytosol, nucleus, plasma membrane	43.18	32.83
CDY39184	Canola	nucleus	40.7	29.92
Solyc05g013770.2.1	Tomato	nucleus	12.04	28.07
Solyc03g112050.2.1	Tomato	cytosol	9.95	25.77
Solyc02g082550.2.1	Tomato	cytosol	11.04	24.89
Solyc10g085720.1.1	Tomato	nucleus	12.24	23.52
Solyc06g051510.2.1	Tomato	cytosol	11.64	22.54
Solyc09g008790.2.1	Tomato	cytosol	11.74	21.3
Solyc06g074700.2.1	Tomato	nucleus	11.54	20.98
Solyc11g066650.1.1	Tomato	nucleus	11.74	20.38
Solyc03g098150.2.1	Tomato	nucleus	15.22	13.13
Solyc03g097350.2.1	Tomato	plastid	12.04	12.75
Solyc06g072340.2.1	Tomato	nucleus	14.63	12.14

Protein Annotations

Gene3D:1.10.510.10	MapMan:16.4.6.8	MapMan:18.4.3.3	Gene3D:3.30.200.20	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
UniProt:K4BXC8	InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056
PANTHER:PTHR24056:SF317	InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc05g009540.2
EnsemblPlants:Solyc05g009540.2.1	UniParc:UPI0002766A76	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:+:3747313..3754027

Molecular Weight (calculated)

116672.0 Da

IEP (calculated)

7.480

GRAVY (calculated)

-1.230

Length

1005 amino acids

Sequence
(BLAST)

0001: MASDSNEPSR RKHHRSSPSD EDTGEPLKRR KHRHHHRHHR HHRHHSKKHL EKSDSKSEKE MVKSKSEIEN GGKPGEEMKI GTVVGVSTLG IDYDMEEGEI
0101: IEDDVVDTAA VGDADETTVT EKLGNEDDLN MELHEAQEQG PADNVEKVDR DYTVSGRHDE QSKSRKADRS RERKSSDKHC ANGSYIDKFH KLDSEPQKED
0201: SITAEEITKQ KSYDEDENEV QDRIIRSSTP ENVGKRHRSV RVSSSHYEHP EERHVTKSSK SPDRSRGRSR SKSVLEESFL VPKSREIDDT YEKESRYKGN
0301: FDDEKIVYNR DYRHGSRDSS RDREKEHNSG NSRSSRDRYY NRESVDRFRE SSLENDRDRV RDKDRERELA REKRRESDKE RRRESDKERE RVRERDRERE
0401: REKARDRERD REREHERGRG REREREREER ERRNRDRESS GRSREADRDR NSDRYSRHQD DSVAYNRRNR HYETDIERGR TSNHLKTETT KQHAVETESE
0501: RSRRDEVEQE DYQEKVVFQL AEQDEEDELD RIKEESRRRR QAILEKYKIK NSPKEQVTQS GDVVEIHMDQ SSKKPAIRQN VVQESIDAKS NGADVEPTFS
0601: VGKSPLQGGQ IGDVLASGAG GLGQGTPKSE RSADMFCDDI FGESPAGIRK MGKGDGVAVE RSGLHDNWDD PEGYYSYRFG EILDGRYEIV AAHGKGVFST
0701: VVRAKDLKAR PGDPEEVAIK MIRNNETMYK AGMEELVILK KLVGADPEDK RHCVRFISSF KYRNHLCLVF ESLHMNLREV LKKFGRNIGL KLTAVRTYAK
0801: QLFIALKHLK NCGVLHCDIK PDNMLVNEAK NVLKLCDFGN AMFAGKNEIT PYLVSRFYRA PEIILGLSYD HPMDIWSVGC CLFELYAGKV LFPGPTNNDM
0901: LRLHMELKGP FPKKMLRKGA FTEQHFDQDL NFLAIEEDPV TKKAIRKLIV NIKPKDISSI ISGSPGEDPK MLAHFKDLME RIFVLDPEKR MTVSQALSHP
1001: FITGK

Best Arabidopsis Sequence Match ( AT3G25840.2 )
(BLAST)

001: MDREGSIRDR DSEGSKRRDK DSDRRRERER EKRREIESDR ERRKEKERER SIDRDRRKER EGDYLRDRAN ERGRSRDRTR YNSRERKREK EREGEKDWER
101: GRETQKDREK YISSDVDYGE MRHKQSRNTR YDAVDDLEMR KPNSLKAHNS KGDKLEETWA NDERSRNEDG QDDNDEGLTW KSPEEEEEEL LNRIKEESRK
201: RMEAILEKHK RKPEQQNELL TQDNGKDIVP ETGAPVSTSP AVVIAANVGQ AKTNLDFDTV AAKAPLIAGG PPTMSGISDS EKNQAQAGLG EGSPKSERSA
301: DMFHDDIFGE SPAGIRKVGG KGDGVPMVRS GLHDNWDDAE GYYSYQFGEL LDGRYEVIAT HGKGVFSTVV RAKDLKAGPA EPEEVAIKII RNNETMHKAG
401: KIEVQILKKL AGADREDRRH CVRFLSSFKY RNHLCLVFES LHLNLREVLK KFGRNIGLQL SAVRAYSKQL FIALKHLKNC GVLHCDIKPD NMLVNEGKNV
501: LKLCDFGNAM FAGKNEVTPY LVSRFYRSPE IILGLTYDHP LDIWSVGCCL YELYSGKVLF PGATNNDMLR LHMELKGPFP KKMLRKGAFI DQHFDHDLNF
601: YATEEDTVSG KLIKRMIVNV KPKDFGSIIK GYPGEDPKIL AHFRDLLDKM FILDPERRLT VSQALAHPFI TGK

Arabidopsis Description

Protein kinase superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8RWN3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.