CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35970	Soybean	nucleus	93.12	92.38
Os12t0640800-01	Rice	mitochondrion	20.22	88.11
AT3G53640.1	Thale cress	cytosol	36.4	56.07
KRH75392	Soybean	nucleus	48.53	55.94
TraesCS4D01G044900.2	Wheat	nucleus	32.66	51.52
VIT_01s0011g03350.t01	Wine grape	nucleus	56.62	51.38
TraesCS4A01G269100.1	Wheat	nucleus	32.66	51.27
TraesCS4D01G044600.1	Wheat	nucleus	32.76	50.94
TraesCS4B01G044900.1	Wheat	nucleus	32.36	50.55
PGSC0003DMT400053226	Potato	mitochondrion	41.86	49.52
Bra025165.1-P	Field mustard	nucleus	44.79	49.17
CDX83561	Canola	nucleus	44.79	49.11
CDY13591	Canola	nucleus	43.88	48.98
AT3G25840.1	Thale cress	nucleus	46.21	48.88
Solyc05g009540.2.1	Tomato	nucleus	49.14	48.36
Bra017346.1-P	Field mustard	nucleus	43.28	48.09
TraesCS5D01G000600.1	Wheat	nucleus	45.7	47.63
AT1G13350.3	Thale cress	nucleus	40.14	47.6
TraesCS5B01G001400.1	Wheat	nucleus	45.5	47.12
TraesCS5A01G000100.1	Wheat	nucleus	45.3	47.06
PGSC0003DMT400033770	Potato	mitochondrion	49.04	46.77
KXG24155	Sorghum	nucleus	44.79	46.34
HORVU5Hr1G000200.27	Barley	cytosol, nucleus	44.08	45.85
Zm00001d031231_P057	Maize	nucleus	43.78	44.73
OQU80322	Sorghum	nucleus	27.6	44.46
GSMUA_Achr1P22430_001	Banana	mitochondrion	44.59	42.9
Zm00001d041183_P004	Maize	nucleus	44.49	42.11
GSMUA_Achr1P12470_001	Banana	nucleus	45.7	41.7
HORVU4Hr1G007330.12	Barley	nucleus, plastid	28.61	41.5
CDY04183	Canola	cytosol, nucleus, plasma membrane	44.59	33.36
HORVU5Hr1G000140.1	Barley	mitochondrion	18.4	32.04
KRH63030	Soybean	cytosol, nucleus	8.49	31.7
Os03t0710100-01	Rice	nucleus	24.97	31.11
CDY39184	Canola	nucleus	41.96	30.36
KRH61991	Soybean	cytosol	9.91	29.97
KRH52649	Soybean	nucleus	11.63	28.54
KRG94066	Soybean	cytosol	3.64	27.27
KRH67569	Soybean	nucleus	12.23	27.25
KRH54290	Soybean	cytosol, nucleus	11.63	27.06
KRH63654	Soybean	nucleus	11.63	27.06
KRH57157	Soybean	cytosol	11.32	26.05
KRH39422	Soybean	cytosol	11.43	25.39
KRH28929	Soybean	nucleus	11.43	25.39
KRH07798	Soybean	cytosol	11.43	25.39
KRH76530	Soybean	nucleus	11.12	24.72
KRH03872	Soybean	nucleus	11.43	23.94
KRG95853	Soybean	cytosol	6.88	23.69
KRH26554	Soybean	nucleus	12.44	22.57
KRH22757	Soybean	nucleus	12.44	22.53
KRH32624	Soybean	nucleus	11.93	21.57
KRH20002	Soybean	nucleus	10.92	20.81
KRH25147	Soybean	mitochondrion	10.52	18.81
KRH14940	Soybean	nucleus	13.25	18.45
KRH73194	Soybean	nucleus	13.35	18.16
KRH60590	Soybean	nucleus	16.28	14.65
KRH09504	Soybean	nucleus	16.38	13.74
KRH45354	Soybean	nucleus	13.25	13.69
KRH41895	Soybean	nucleus	15.37	13.6
KRH07651	Soybean	nucleus	13.04	13.56
KRH38978	Soybean	nucleus	15.87	13.41

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100776908	MapMan:16.4.6.8	MapMan:18.4.3.3	Gene3D:3.30.200.20	EMBL:ACUP02012641
EnsemblPlantsGene:GLYMA_20G114300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	UniProt:I1NFH2	InterPro:IPR000719	ProteinID:KRG90792.1	EnsemblPlants:KRG90793	ProteinID:KRG90793
ProteinID:KRG90793.1	InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056
PANTHER:PTHR24056:SF317	InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000233F1B2
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:35601285..35609411

Molecular Weight (calculated)

114268.0 Da

IEP (calculated)

7.147

GRAVY (calculated)

-1.257

Length

989 amino acids

Sequence
(BLAST)

001: MATDARDSRR KYRRSSSPED VDRSSKRHKH RHHSHRHRHG SKKRDEEIKF DDRTIGAVPS PTPHGHLPDD DDVEEGEILE DEALDGEVGK KETESDAEPG
101: EIKVTGDRDV RSDNQNSGHL TKISVTRNED IRDDKFISPA INAEDDVSPN CSSSETRDGK HAQARTDGVG NGFLDPKSSK GDKWHNGELG HFKGNEKLKG
201: DFDDETLEAN VRKAHYNRNS SSESGGGKYR MSGSSPSHGR YRSRSRSIGH TRDRSRSRSI IDEYAHSKRR RSDYDHDEER VRVRGREHGH GSVVDDRREY
301: STRYHNREAR DRDRSRDRDV DRDLHREKKQ EETSRGKEIE WEHKRGKERE RSRERYRRDA EKDRSREREE DGDRRQEKER DRSWDTVFER DRRREKERDR
401: SRDRTIGGKR DRDPENERDD KNRERRDDRY GHKDRDTANG KDRHLRHEDG NDNGDRYRKH SRHEENEYHW ERKRNSDNPV KVYNSMGSTA EVDESKLTSS
501: EVEPDDLEED TLQLPEQEEE DLNRIKEESR RRREAIMEKY KKQHQQVEAV VGNEGNDKDA DIPNDISEAC DGKTDDADYV EPSFAVGKSP ENVNVASKKI
601: SPAGGLGEGT PKSERSEDKF CDDIFGETPT GVRKSGKGDG LLIERVGLHD NWDDAEGYYS YRIGEILDSR YEVTAAHGRG VFSTVVRAKN LKMGNGEPEE
701: VAIKIIRSND TMYKAGMDEL VILKKLVGAD PDDKRHCVRF LSSFRYRNHL CLVFESLNMN LREVLKKFGR NIGLRLTAVR AYAKQLFIAL KHLRNCGVLH
801: CDIKPDNMLV NEAKNVLKLC DFGNAMFAGK NEVTPYLVSR FYRAPEIILG LPYDHPLDIW SVGCCLYELY IGKVLFPGFT NNDMLRLHME LKGPFPKKML
901: RKGAFTEQHF DQDLNFLATE EDPVTKRTIK RLILNIKPKD IGTLITGSPG EDPKMLANFK DLLEKVFVLD PDKRLTVSQA LNHPFITGK

Best Arabidopsis Sequence Match ( AT3G25840.1 )
(BLAST)

001: MANDKQIESH HRKHHRSSSS SDDTEKASKR HKHRHHKHHH HRHRHHRDKK RENEIPSAGD ETEILDVTPA APIVVSNGCE EEDVEEGEIL EEDGIGDVLM
101: KTADSDGESG EIKFEDNNLP PLGEKGRQGE EKSSNGVLTR ESEREDKRWD KEAGGPSERV SKLSYDNGRS SFSPSNSRQS NEGRARSRSK SHDRERETSR
201: SRFAEDEFSD RGRHHDSSRD YHHDRVDSVR TEERYHRRGR YEENDRQYSR EVLERDRSKE RDMDREGSIR DRDSEGSKRR DKDSDRRRER EREKRREIES
301: DRERRKEKER ERSIDRDRRK EREGDYLRDR ANERGRSRDR TRYNSRERKR EKEREGEKDW ERGRETQKDR EKYISSDVDY GEMRHKQSRN TRYDAVDDLE
401: MRKPNSLKAH NSKGDKLEET WANDERSRNE DGQDDNDEGL TWKSPEEEEE ELLNRIKEES RKRMEAILEK HKRKPEQQNE LLTQDNGKDI VPETGAPVST
501: SPAVVIAANV GQAKTNLDFD TVAAKAPLIA GGPPTMSGIS DSEKNQAQAG LGEGSPKSER SADMFHDDIF GESPAGIRKV GGKGDGVPMV RSGLHDNWDD
601: AEGYYSYQFG ELLDGRYEVI ATHGKGVFST VVRAKDLKAG PAEPEEVAIK IIRNNETMHK AGKIEVQILK KLAGADREDR RHCVRFLSSF KYRNHLCLVF
701: ESLHLNLREV LKKFGRNIGL QLSAVRAYSK QLFIALKHLK NCGVLHCDIK PDNMLVNEGK NVLKLCDFGN AMFAGKNEVT PYLVSRFYRS PEIILGLTYD
801: HPLDIWSVGC CLYELYSGKV LFPGATNNDM LRLHMELKGP FPKKMLRKGA FIDQHFDHDL NFYATEEDTV SGKLIKRMIV NVKPKDFGSI IKGYPGEDPK
901: ILAHFRDLLD KMFILDPERR LTVSQALAHP FITGK

Arabidopsis Description

Protein kinase superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8RWN3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.