CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04931
KRH16160

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24740.1	KRH04931	AT4G31580.1	10593939
AT4G24740.1	KRH16160	AT4G31580.1	10593939

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63654	Soybean	nucleus	97.88	97.88
KRH57157	Soybean	cytosol	90.12	89.07
VIT_17s0000g09500.t01	Wine grape	nucleus	87.06	85.06
AT4G24740.1	Thale cress	nucleus	83.76	83.37
GSMUA_Achr11P...	Banana	cytosol	66.35	83.19
KRH03872	Soybean	nucleus	90.82	81.78
PGSC0003DMT400046853	Potato	cytosol	81.88	80.56
Solyc03g112050.2.1	Tomato	cytosol	71.53	78.35
GSMUA_Achr8P28600_001	Banana	cytosol	39.76	78.24
Os12t0460800-03	Rice	cytosol	34.59	78.19
TraesCS6D01G193300.1	Wheat	cytosol	73.18	72.33
TraesCS6A01G210100.1	Wheat	cytosol	73.18	72.33
TraesCS6B01G238900.1	Wheat	cytosol	73.18	72.33
KXG30551	Sorghum	cytosol	73.41	69.96
HORVU5Hr1G091970.12	Barley	cytosol, mitochondrion	69.18	69.34
TraesCS5D01G378900.2	Wheat	cytosol, mitochondrion	69.18	69.34
TraesCS5B01G371800.1	Wheat	cytosol	69.18	69.34
TraesCS5A01G369500.2	Wheat	cytosol	69.18	69.34
KXG35096	Sorghum	cytosol	69.18	69.34
Zm00001d017096_P005	Maize	cytosol	72.47	69.21
GSMUA_Achr3P17160_001	Banana	cytosol	72.94	69.04
KRH67569	Soybean	nucleus	71.53	68.47
Zm00001d050970_P003	Maize	cytosol	71.53	68.16
Zm00001d005361_P007	Maize	cytosol, plastid	67.29	67.77
HORVU6Hr1G053760.52	Barley	cytosol	69.41	67.66
KRG95853	Soybean	cytosol	44.47	65.85
KRH61991	Soybean	cytosol	50.35	65.44
KRH52649	Soybean	nucleus	61.41	64.76
KXG37288	Sorghum	cytosol	55.53	61.62
KRG94066	Soybean	cytosol	18.12	58.33
CDY34307	Canola	plastid	83.76	48.97
CDY03422	Canola	plastid	83.53	48.83
Bra013829.1-P	Field mustard	nucleus	80.24	47.63
KRH63030	Soybean	cytosol, nucleus	19.29	30.94
KRH28929	Soybean	nucleus	25.88	24.72
KRH76530	Soybean	nucleus	25.65	24.49
KRH07798	Soybean	cytosol	25.18	24.04
KRH39422	Soybean	cytosol	24.71	23.6
KRH32624	Soybean	nucleus	27.06	21.02
KRH22757	Soybean	nucleus	26.12	20.33
KRH26554	Soybean	nucleus	25.88	20.18
KRH20002	Soybean	nucleus	23.76	19.46
KRH25147	Soybean	mitochondrion	24.24	18.63
KRH14940	Soybean	nucleus	25.88	15.49
KRH73194	Soybean	nucleus	26.12	15.27
KRH07651	Soybean	nucleus	26.59	11.88
KRH45354	Soybean	nucleus	26.59	11.81
KRG90793	Soybean	nucleus	27.06	11.63
KRH35970	Soybean	nucleus	27.06	11.53
KRH60590	Soybean	nucleus	27.29	10.55
KRH09504	Soybean	nucleus	28.24	10.18
KRH38978	Soybean	nucleus	27.53	9.99
KRH41895	Soybean	nucleus	25.65	9.75
KRH75392	Soybean	nucleus	13.18	6.53
CDY03423	Canola	cytosol, peroxisome, plastid	1.41	1.92
Bra013830.1-P	Field mustard	plastid	0.47	0.68

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100791858	MapMan:18.4.3.2	Gene3D:3.30.200.20	EMBL:ACUP02003512	EnsemblPlantsGene:GLYMA_06G175900
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	UniProt:I1KC99	InterPro:IPR000719	EnsemblPlants:KRH54290	ProteinID:KRH54290
ProteinID:KRH54290.1	InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24058
PANTHER:PTHR24058:SF102	InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0001BA56EE

Description

hypothetical protein

Coordinates

chr6:+:14879530..14883195

Molecular Weight (calculated)

49547.9 Da

IEP (calculated)

8.535

GRAVY (calculated)

-0.467

Length

425 amino acids

Sequence
(BLAST)

001: MEMERIVEFP HTYMDRPPRK RARLGWDIAE VPKAQVGLFC GQEVENISSF APSEHPPSSL FKGVARNGSP PWRDDDKDGH YMFELGDNLT SRYKIHGKMG
101: EGTFGQVLEC WDRERKEMVA IKIVRGIKKY REAAMVEIEV LQQLGKHDKG SNRCVQIRNW FDYRNHICIV FEKLGPSLYD FLRKNSYRSF PIDLVREIGW
201: QLLECVAFMH DLHMIHTDLK PENILLVSPE YLKIPDYKST TRSPSSFFKR VPKSSAIKVI DFGSTTYERE DQTYIVSTRH YRAPEVILGL GWSYPCDIWS
301: VGCILVELCT GEALFQTHEN LEHLAMMERV LGPIPQQMLK RVDRHAEKYV RRGRLDWPEG AASRESIKAV MKLPRLQNII MQHVDHSAGD LIHLLQGLLR
401: YDPFERLTAR DALRHSFFTR DQLRR

Best Arabidopsis Sequence Match ( AT4G24740.1 )
(BLAST)

001: MEMERVHEFP HTHMDRRPRK RARLGWDVLP QATKAQVGMF CGQEIGNISS FASSGAPSDN SSSLCVKGVA RNGSPPWRED DKDGHYIFEL GDDLTPRYKI
101: YSKMGEGTFG QVLECWDRER KEMVAVKIVR GVKKYREAAM IEIEMLQQLG KHDKGGNRCV QIRNWFDYRN HICIVFEKLG SSLYDFLRKN NYRSFPIDLV
201: REIGWQLLEC VAFMHDLRMI HTDLKPENIL LVSSDYVKIP EYKGSRLQRD VCYKRVPKSS AIKVIDFGST TYERQDQTYI VSTRHYRAPE VILGLGWSYP
301: CDVWSVGCII VELCTGEALF QTHENLEHLA MMERVLGPFP QQMLKKVDRH SEKYVRRGRL DWPDGATSRD SLKAVLKLPR LQNLIMQHVD HSAGELINMV
401: QGLLRFDPSE RITAREALRH PFFARRR

Arabidopsis Description

AFC2At4g24740 [Source:UniProtKB/TrEMBL;Acc:Q1EBU3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.