Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P09230_001 | |
| GSMUA_Achr8P24800_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G24740.1 | GSMUA_Achr4P09230_001 | AT4G31580.1 | 10593939 |
| AT4G24740.1 | GSMUA_Achr8P24800_001 | AT4G31580.1 | 10593939 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os12t0460800-03 | Rice | cytosol | 68.52 | 78.72 |
| GSMUA_Achr11P... | Banana | cytosol | 77.78 | 49.56 |
| Solyc03g112050.2.1 | Tomato | cytosol | 81.94 | 45.62 |
| VIT_17s0000g09500.t01 | Wine grape | nucleus | 85.19 | 42.3 |
| GSMUA_Achr3P17160_001 | Banana | cytosol | 87.04 | 41.87 |
| TraesCS6B01G238900.1 | Wheat | cytosol | 82.87 | 41.63 |
| PGSC0003DMT400046853 | Potato | cytosol | 82.87 | 41.44 |
| TraesCS6A01G210100.1 | Wheat | cytosol | 82.41 | 41.4 |
| TraesCS6D01G193300.1 | Wheat | cytosol | 82.41 | 41.4 |
| KRH57157 | Soybean | cytosol | 80.56 | 40.47 |
| KXG30551 | Sorghum | cytosol | 83.33 | 40.36 |
| KRH63654 | Soybean | nucleus | 78.7 | 40.0 |
| PGSC0003DMT400030615 | Potato | nucleus | 79.17 | 39.86 |
| KRH54290 | Soybean | cytosol, nucleus | 78.24 | 39.76 |
| Zm00001d050970_P003 | Maize | cytosol | 81.94 | 39.69 |
| Solyc05g013770.2.1 | Tomato | nucleus | 79.17 | 39.68 |
| GSMUA_Achr5P29170_001 | Banana | nucleus | 79.63 | 39.45 |
| HORVU6Hr1G053760.52 | Barley | cytosol | 79.63 | 39.45 |
| Zm00001d017096_P005 | Maize | cytosol | 81.02 | 39.33 |
| GSMUA_Achr9P03190_001 | Banana | nucleus | 78.7 | 38.99 |
| VIT_01s0137g00580.t01 | Wine grape | nucleus | 77.78 | 38.89 |
| KRH03872 | Soybean | nucleus | 81.48 | 37.29 |
| AT4G24740.1 | Thale cress | nucleus | 73.15 | 37.0 |
| KXG37288 | Sorghum | cytosol | 62.96 | 35.51 |
| GSMUA_Achr8P04030_001 | Banana | mitochondrion | 65.28 | 30.65 |
| CDY34307 | Canola | plastid | 75.46 | 22.42 |
| CDY03422 | Canola | plastid | 75.0 | 22.28 |
| Bra013829.1-P | Field mustard | nucleus | 69.44 | 20.95 |
| GSMUA_Achr4P11760_001 | Banana | cytosol | 30.09 | 17.57 |
| GSMUA_Achr11P... | Banana | cytosol | 20.83 | 15.57 |
| GSMUA_Achr5P11070_001 | Banana | cytosol | 28.7 | 15.12 |
| GSMUA_Achr2P11360_001 | Banana | cytosol | 30.56 | 14.93 |
| GSMUA_Achr1P02800_001 | Banana | cytosol | 27.78 | 14.49 |
| GSMUA_Achr8P26710_001 | Banana | cytosol | 29.63 | 14.45 |
| GSMUA_Achr8P04590_001 | Banana | nucleus | 30.09 | 13.6 |
| GSMUA_Achr4P18950_001 | Banana | nucleus | 32.87 | 10.11 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.09 | 9.13 |
| GSMUA_Achr3P02060_001 | Banana | nucleus | 33.33 | 7.24 |
| GSMUA_Achr10P... | Banana | nucleus | 20.83 | 6.99 |
| GSMUA_Achr8P14500_001 | Banana | nucleus | 29.63 | 6.64 |
| GSMUA_Achr2P21700_001 | Banana | nucleus | 33.33 | 6.48 |
| GSMUA_Achr11P... | Banana | nucleus | 32.41 | 6.38 |
| GSMUA_Achr1P22430_001 | Banana | mitochondrion | 28.7 | 6.03 |
| GSMUA_Achr1P12470_001 | Banana | nucleus | 29.17 | 5.81 |
| GSMUA_Achr7P11320_001 | Banana | nucleus | 32.87 | 5.52 |
| GSMUA_Achr11P... | Banana | nucleus | 10.19 | 3.53 |
| CDY03423 | Canola | cytosol, peroxisome, plastid | 2.31 | 1.6 |
| Bra013830.1-P | Field mustard | plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.510.10 | MapMan:18.4.3.2 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004672 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006464 | GO:GO:0006468 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016301 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr8G28600_001 | EnsemblPlants:GSMUA_Achr8P28600_001 |
| EnsemblPlants:GSMUA_Achr8T28600_001 | InterPro:IPR000719 | InterPro:Kinase-like_dom_sf | UniProt:M0TUG3 | PFAM:PF00069 | ScanProsite:PS00108 |
| PFscan:PS50011 | PANTHER:PTHR24058 | PANTHER:PTHR24058:SF52 | InterPro:Prot_kinase_dom | SMART:SM00220 | SUPFAM:SSF56112 |
| InterPro:Ser/Thr_kinase_AS | UniParc:UPI0002957039 | : | : | : | : |
Description
Serine/threonine-protein kinase AFC1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G28600_001]
Coordinates
chr8:-:31342126..31343535
Molecular Weight (calculated)
24700.8 Da
IEP (calculated)
8.775
GRAVY (calculated)
-0.338
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MHDMRLIHTD LKPENILLVS PEYIKVPDYK VSSRSPKQGS YFKRLPKSSA IKVIDFGSTT YDRHDNSYVV STRHYRAPEV ILGLGWSYPC DIWSVGCILV
101: ELCSGETLFQ THENLEHLAM MERVLGPLPS NMLRLAARDA ERYVRRGHLN WPEGATSRES MKAVLKLPRL QNLVMQHSDH SAGDFIDLLQ GLLRYDPADR
201: LAANAALLHP FFTRNR
101: ELCSGETLFQ THENLEHLAM MERVLGPLPS NMLRLAARDA ERYVRRGHLN WPEGATSRES MKAVLKLPRL QNLVMQHSDH SAGDFIDLLQ GLLRYDPADR
201: LAANAALLHP FFTRNR
001: MTKVAIVMHD LRMIHTDLKP ENILLVSSDY VKIPEYKGSR LQRDVCYKRV PKSSAIKVID FGSTTYERQD QTYIVSTRHY RAPEVILGLG WSYPCDVWSV
101: GCIIVELCTG EALFQTHENL EHLAMMERVL GPFPQQMLKK VDRHSEKYVR RGRLDWPDGA TSRDSLKAVL KLPRLQNLIM QHVDHSAGEL INMVQGLLRF
201: DPSERITARE ALRHPFFARR R
101: GCIIVELCTG EALFQTHENL EHLAMMERVL GPFPQQMLKK VDRHSEKYVR RGRLDWPDGA TSRDSLKAVL KLPRLQNLIM QHVDHSAGEL INMVQGLLRF
201: DPSERITARE ALRHPFFARR R
Arabidopsis Description
AFC2At4g24740 [Source:UniProtKB/TrEMBL;Acc:Q1EBU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.